Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03396 ATGGCTAATAACCCTTACTCTAAtcttttctcttcttcatcatcaagtTTCTTCAAATTCAACCATATTTTACCATCTTCAAACCCTTCTCCACATCATAACAACCCTTTTCTTCACCACCATAGCTTCATCAACAATAACCACTCCTTTTTCCACTACATCTCACCACCTTCTCCTCCTCTTAGAGAAGAACTACCTCTTTTAAGCCTAATTCCagcaaaacaagaagaagaatatgAAGATCAACAATCACATGAAGATATTCAAGATCATGACCTTCCTTGCACTGCCATGGATTTAGAAGAAACAACAGAAGAAGATggaactactactactacttctTCTTCTACTACTGTCACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTCTACTTTCTTCCTCTAATTCCTCAGATATCACTGCTGATAATAATAAAGATCATGCTGAGGATTCTTGTTCAGGATTCATGGTTAATAATAGACTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTCCAAAACTTTCAACAGATATAACAACATGCAGaTGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGCACACAACCAACAGGAATGTTAAGACTACCTTGTTACTGTTGTGCACCAGGATGTAGAAACAACATTGATCATCCAAGAGCAAAGCCATTGAAAGATTTTAGAACACTTCAAACACATTATAAGAGAAAACATGGAATTAAACCTTTCATGTGTAGAAAATGTAGCAAAGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGTTATGGTATTGTATCTGTGGTTCTGATTTCAAACATAAGAGATCTCTTAAAGATCATATTAAAGCTTTTGGTAATGGTCATGCTGCTTATGGATTTGATggatttgaagaagaagatgaacctGCTTCTGAAGTAGAGCAAGATAATGAATAA 1044 0.3391 MANNPYSNLFSSSSSSFFKFNHILPSSNPSPHHNNPFLHHHSFINNNHSFFHYISPPSPPLREELPLLSLIPAKQEEEYEDQQSHEDIQDHDLPCTAMDLEETTEEDGTTTTTSSSTTVTVALHIGLPNPSAAEMASLLSSSNSSDITADNNKDHAEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGFDGFEEEDEPASEVEQDNE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03396 347 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 44 347 - -
Tsu07g03396 347 Gene3D Classic Zinc Finger 251 326 - -
Tsu07g03396 347 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Tsu07g03396 347 SMART c2h2final6 189 211 IPR013087 -
Tsu07g03396 347 SMART c2h2final6 273 293 IPR013087 -
Tsu07g03396 347 Gene3D Classic Zinc Finger 188 211 - -
Tsu07g03396 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Tsu07g03396 347 PANTHER ZINC FINGER PROTEIN WIP2 44 347 IPR043584 GO:0003700|GO:0010468
Tsu07g03396 347 Pfam Zinc finger, C2H2 type 189 208 IPR013087 -
Tsu07g03396 347 SUPERFAMILY beta-beta-alpha zinc fingers 185 211 IPR036236 -
Tsu07g03396 347 SUPERFAMILY beta-beta-alpha zinc fingers 255 293 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03396 Tsu-Chr7 40368667 40371151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03396 61 347 C2H2 Transcription Factor Family AT3G57670 69.427 1.65e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g03396 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03396 - - qsu:112003411 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03396 07 40368667 40371151 Tsu07g03396 07 40368667 40371151 ECH
Tsu07g03396 07 40368667 40371151 Tsu01g01902 01 19126320 19129498 PCT