Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03390 ATGGAGGGAGGAGCGAGTAAGAAGAAAGCACCACCACTCTCTTTGGAGCAATTCATCTCTATCACCACTCCTCTTCTCGACTTGGAAAAGGATGCTGAGATATCTAACTCAATTGCTACTGGCGCGTCGAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATACTTAACTTGAAGTGTGTGGATGTTCAGACGGGGCTTATGGGAAAGTCTTTGATCGAGTTACAATCCACAAAAGCAGATGTGCTTCCTGCACACAAGTTTGGCACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGACTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGATTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGATTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATACCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGGCCAAGAAGGATGTATCCTTCACTTCCATTAATAGAAATCTTGATCACTCTCAGAAAGATGCAATTACAAAAGCCCTATCGTCGAAGAATGTTTTCTTGCTACATGGACCCCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCTGCATCAAATATCGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAAAGTTAAGCTGGTGAGGATCGGTCATCCTGCACGTTTATTGCCGCAAGTGCTGGACAGTGCATTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGAAAAGAAATGAAGgTATTGAATGGAAAGCTGCTAAAAACCAAAGAGAAAAATACAAGGAGGGAGATACAGAAGGAACTTAGGACTCTATCTAGAGAAGAGCGGAAAAGGCAGCAGCTTGCAGTTACAGACGTAATTAAAACTGCAGATGTAATATTAACTACTCTGATTGGGGCTTTCACTAAGAAACTTGACCGCACTTCATTTGATTTGGTGATTATCGACGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTAAAGGGTACAAGATGTATACTTGCAGGAgatcatcttcaacttcctccAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTCTTCGAACGACTTGCTGAACTGTATGGAGATGAAGTCACATCTATGCTTACCGTCCAGTATCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTATAACAGTAAGGTCAAGGCTCATCCAAGTGTTGCTGCACATATGCTATATGATCTTGAAGATGTGAAGAGGACATCTTCAACTGAACCAACCCTTCTTCTCATAGACACAGCTGGATGTGATATGgatgaaaagaaagatgaagaGGATAGCACCCTTAATGAAGGAGAATCTGAGGTTGCTATGGCTCATGCAAAGCGATTAGTGCAAAGCGGGGTGCTCCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTAGTTTTACTTAAGATGTTGAGAAACAAGGAGAACTCGCTGAAGGATATTGAAATCTCAACAGTTGACGGTTTCCAGGGTAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGTCGGCGAATGAATGTGGCTGTGACCCGGGCAAGAAGGCAATGCTGTATTGTCTGTGACACTGAGACAGTTAGTAGTGATGGATTTCTAAAGCGGCTGGTTGAATATTTTGAAGAGCATGGCGAATATCAGAGTGCATCTGAGTACCAGAATGAATAA 1944 0.4151 MEGGASKKKAPPLSLEQFISITTPLLDLEKDAEISNSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALVQLSKGVHKGPASDLIPVLFGERQPTVAKKDVSFTSINRNLDHSQKDAITKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHKVKLVRIGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTADVILTTLIGAFTKKLDRTSFDLVIIDEAAQALEIACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHPSVAAHMLYDLEDVKRTSSTEPTLLLIDTAGCDMDEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLRNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLVEYFEEHGEYQSASEYQNE 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03390 647 PANTHER HELICASE WITH ZINC FINGER 2 13 645 - -
Tsu07g03390 647 CDD DEXXQc_SMUBP2 196 444 - -
Tsu07g03390 647 SMART ultradead3 193 444 IPR014001 -
Tsu07g03390 647 CDD SF1_C_Upf1 445 633 IPR041679 -
Tsu07g03390 647 Coils Coil 298 337 - -
Tsu07g03390 647 Pfam AAA domain 197 411 IPR041677 GO:0004386
Tsu07g03390 647 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 13 645 - -
Tsu07g03390 647 Pfam AAA domain 420 616 IPR041679 -
Tsu07g03390 647 Gene3D - 41 143 - -
Tsu07g03390 647 Gene3D - 443 647 IPR027417 -
Tsu07g03390 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 632 IPR027417 -
Tsu07g03390 647 Gene3D - 23 427 IPR027417 -
Tsu07g03390 647 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Tsu07g03390 647 SMART AAA_5 211 433 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03390 Tsu-Chr7 40323294 40329095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03390 170 380 Core DNA Replication Machinery Family AT1G08840 27.014 1.18e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03390 K19036 - gmx:100810545 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03390 07 40323294 40329095 Tsu07g03390 07 40323294 40329095 ECH