Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03386 atgtCTCAGAATGATAACAATAACATTGATGAATTTGATCAAGATCCTATGTCTTGGTCAAGGCAACTGGAAAAGCATTTTTGTGGTGAATTCTCTATGGCTTCCATTCAATCTAACCTCAAAATGGAAGATAAAAGTCAAGTGGAGGTGTGCAACTATGCAACATTTGTTGGGGTTTATGATGGAAACAAAGGAGATTCTGCTGCAAGTTATCTCaacaattatattttcaaaGATCTACTAGACCGTATTAAGAAATATCTGAAGAGATTTAATATGAATAACGATGCTGCCAAAAGAATCATGTTAGAAAGCTTTTCTGAAATGGAGAAACAAGTTATTGACATCGCTGAGTTTGGTTATTCGGGTTGGAGGAACCCAAATATGAGTGTGGTAAGCTCAGGCtgtttggtttgtttgatttgggGGCAGCAATTGTATCTTGCTAATCTCGGAGACTCGCGAGCAATACTATGTTCTAACCTGGCTGGTTCAGAGATGCTGGTTCATCAGATGCTGAGAGACCACAACTGTAGAAACGCAGACATTCGGCAAGAACTCGAAGCATCACATGGGCACGACGATACCATTTGCTCCAATGTCTTTGGAGAATGGCGCGTCAAAGGTTTAAGTGAGACAAGTAGATGTATAGGAAATGCATATTTGAAGAAAGCTGAGTTTACTACAAGTGTCGACTTTGAAGCCCCACCAGGAGAAGAGGTGACGTCCATATTCACGGAACCAGTGCTATCAGCCGAACCTGAGTTTTATTCAAGAGATTTAGATGGTACTGAAAAGTTCATTGTATTTGGATCTGGTGGATTTTGGAAATTGTTGACAAATGAGGAGGCTGCTAAGATCGTTAATGACCATCCACGAGAAGGAATTGCAAAGCGGCTTGCAGCTGAGGCTGTAAAAGTTGCAGCTGAAAGACGGGGCCTAGCCTATAGGGAAGTGATGCTAGCCCCTAAGGGAGTGAAAATAAGCGGAAAACCTTGTACTTCTTCTGAACTAGTTAAGCCACTTTATCATGATGATATAACTGTAATTGTTGTATATTTGGACTTAAATCTTCCTGTGACAGTAGACAGCGAGACTTACAACAGTTACAGAAGCCACTCGGATAGTGTTCAACGATCGAGTTTTGGCTATGATGTGAAAGTTGATGAAAAATGGGATTATGGGAAGATTGATGATCAGAATGttaGGACTGAAGTGCAAGTAACTGTTGATGCTCTTGATTATGATATGACACTGAAAAATAAACCAAGTAACAAAAGGAAGTATAAGAGttcagaGGTAGGAGTCGGTACCATTAGATTTACAGGGCAAATTGGTAGTATCAAAGTCAAAATATTGGTGGATGGGGGTAGCTCAGACAATTTCATACAACCAAGAATTGCTCAAGTGCTGAAATTACCTATAGAACCAGCTCCAAATCTCAGGGTTTTGGTTGGTAATGGCCAAATGCTTAGTGCAGAAGCTGGACCATTAACTGATCTTTTGAAGAAAGACAATTTTACTTGGAATTCTGCAGCAGATTCCGCTTTTCAGAAATTGAAACAAGCTATGATTGAAGCTCCAGTACTCACTTTTCCTGATTTTACTCAACCCTTCATTCTAGAGACTGATGCTTCTGGACTATGA 1647 0.3916 MSQNDNNNIDEFDQDPMSWSRQLEKHFCGEFSMASIQSNLKMEDKSQVEVCNYATFVGVYDGNKGDSAASYLNNYIFKDLLDRIKKYLKRFNMNNDAAKRIMLESFSEMEKQVIDIAEFGYSGWRNPNMSVVSSGCLVCLIWGQQLYLANLGDSRAILCSNLAGSEMLVHQMLRDHNCRNADIRQELEASHGHDDTICSNVFGEWRVKGLSETSRCIGNAYLKKAEFTTSVDFEAPPGEEVTSIFTEPVLSAEPEFYSRDLDGTEKFIVFGSGGFWKLLTNEEAAKIVNDHPREGIAKRLAAEAVKVAAERRGLAYREVMLAPKGVKISGKPCTSSELVKPLYHDDITVIVVYLDLNLPVTVDSETYNSYRSHSDSVQRSSFGYDVKVDEKWDYGKIDDQNVRTEVQVTVDALDYDMTLKNKPSNKRKYKSSEVGVGTIRFTGQIGSIKVKILVDGGSSDNFIQPRIAQVLKLPIEPAPNLRVLVGNGQMLSAEAGPLTDLLKKDNFTWNSAADSAFQKLKQAMIEAPVLTFPDFTQPFILETDASGL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03386 548 Pfam RNase H-like domain found in reverse transcriptase 509 547 IPR041577 -
Tsu07g03386 548 SUPERFAMILY PP2C-like 13 355 IPR036457 -
Tsu07g03386 548 Pfam Protein phosphatase 2C 54 308 IPR001932 -
Tsu07g03386 548 PANTHER ALPHABET, ISOFORM E-RELATED 9 358 - -
Tsu07g03386 548 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 9 358 - -
Tsu07g03386 548 CDD PP2Cc 31 354 IPR001932 -
Tsu07g03386 548 Gene3D - 6 359 IPR036457 -
Tsu07g03386 548 SMART PP2C_4 24 352 IPR001932 -
Tsu07g03386 548 SUPERFAMILY DNA/RNA polymerases 492 547 IPR043502 -
Tsu07g03386 548 Gene3D - 488 538 IPR043128 -
Tsu07g03386 548 ProSiteProfiles PPM-type phosphatase domain profile. 30 354 IPR001932 -
Tsu07g03386 548 CDD retropepsin_like 441 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03386 Tsu-Chr7 40281618 40285662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03386 19 355 PP2C-type Phosphatase Gene Family AT5G06750 38.123 1.63e-73 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03386 K01102 - egt:105976568 244.202