Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03376 ATGTGCTGTGAGTCGGAGCGGTTAAAGTCTGCACAATCTTCGTCTGTGACTCCGATTTTGACAAGCGATTCTCAACCAAGAACCGACGCTATGAATCACTTAACTGTTGGCACTGAAGATGCTTTTACGAGCTTGCTTGAGCTTGCTGCTAATAATGATGTTGAAGGGTTCAAACGAATGATTGAGTATGATCCTACGTCGGTTGATGAGGTTGGATTATGGTATGGTCGTCGCAAGGGATCAAAACAGATGGTCAATGAGGAAAGGACTCCTTTGATGGTTGCTGCTACATATGGTAGCATTGATGTTATGAAACTGATTATTTCTCTATCTGATGTAGACATCAATAGGCCTTGTGGTCTTGACAAGAGCACTGCTCTTCACTGTGCTGCATCGGCTGGGGCGGAAAATGCTGTTGATGCTGTGAAGCTGCTTCTTGCAGCAGGGGCTGATCCCAATTCTGTGGATGCTAATGGGGATCGTCCGCCAGATGTTATTGTTTATCCCCCTAAGCTTGAATTTGTGAAAAACAGTCTTGAAGAGCTTCTTCAAACTGATAATCCTAGTGCTGGTTGTAATCTTAGGGTGATCACAAACTCGTTTAATTCGTATTCTCCTCCTTTGTCAGCTTCACCTGAGAACGGGTCTCCTTCTCCACCACCGGATCTTCTGTTGAAGTTAAAATCAATCGATGTCCCTATTTCTCCTGCTGGatctgagaagaaagaatatcCCGTTGATCCATCCCTTCCTGATATAAAAAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCAGACCTTGTTCACGGGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGAAGAAGGGACCCAAGGAAGTATCATTATAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGCGGGGATATGTGTGAATACGCTCATGGTGTTTTTGAGTGTTGGCTGCATCCTGCACAATATAGAACCCGTCTATGCAAGGACGGGATAAACTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCGTTGTATGTTTCAACTGGTTCTGCAGTTCCCTCACCTCGGTCAAGCGCGTCTTCTGCTATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCGCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCACCGATGTCCCCTTCCGGCAATGGCATTTCACACAATTCTGTTCCTTGGCCCCAGCCAAATATCCCAGCATTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGATTGAGATCTTCACTCAATGCTAGAGATATTCATATGGATGAATTTGAGATGTTATCTGATTATGATCAACAGCAACAGCTCCTTAATGAGTTGGCGTGCCTCTCTCCTCGTCATTTGAATTCTAACAGTCTTAGTCGCTCTGGTAGAATGAAGCCATTGAATCCATCAAATCTCGATGACCTCTTTTCTGCCGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGACTTCAACTATTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAGAACATGTTGTCACCAgtgaatacaaatttttctcCTAAAAATGTTGACCATCATTTATTGCAGGCAGCTTCTTATGGTGTTCAGCCATCAGGAAGAATGTCTCCACGAAACATGGAACCTATCTCTCCAATGAGCTCAAGGATGTCAATGCTCACTCAACGCGATAAGCAGCAACAGTTTCGCAGCCTGAGCTTCCGCGAGCACAGCTCTAACTCTATGCTGGCAGCTGCTGGCTCAGTCAATTCTTGGTCGAAATGGGAATCCCCCAATGGTAAGTTGGATTGGGCTCACAATGCTGATGAAGTAGGCAAGCTCCGCAGATCATCTTCGTTTGAGCTCGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTTCTATCTCAAGTGCCACGCCAACTGGATCGTCTGGTGAGGGATTGAATATGAGCACACAAATGGAGTCCGTTGATCATGCTGTATTGGGAACATGGCTTGAACAGATGCAGCTCGATCATCTTGTGGCTCAACAAAACTGA 2196 0.4495 MCCESERLKSAQSSSVTPILTSDSQPRTDAMNHLTVGTEDAFTSLLELAANNDVEGFKRMIEYDPTSVDEVGLWYGRRKGSKQMVNEERTPLMVAATYGSIDVMKLIISLSDVDINRPCGLDKSTALHCAASAGAENAVDAVKLLLAAGADPNSVDANGDRPPDVIVYPPKLEFVKNSLEELLQTDNPSAGCNLRVITNSFNSYSPPLSASPENGSPSPPPDLLLKLKSIDVPISPAGSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHNSVPWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDEFEMLSDYDQQQQLLNELACLSPRHLNSNSLSRSGRMKPLNPSNLDDLFSAESSSPRYADPTLTSTIFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVDHHLLQAASYGVQPSGRMSPRNMEPISPMSSRMSMLTQRDKQQQFRSLSFREHSSNSMLAAAGSVNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATSISSATPTGSSGEGLNMSTQMESVDHAVLGTWLEQMQLDHLVAQQN 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03376 731 SMART ANK_2a 40 70 IPR002110 GO:0005515
Tsu07g03376 731 SMART ANK_2a 87 117 IPR002110 GO:0005515
Tsu07g03376 731 SMART ANK_2a 122 154 IPR002110 GO:0005515
Tsu07g03376 731 PANTHER UNKEMPT FAMILY MEMBER 31 728 IPR045234 -
Tsu07g03376 731 Gene3D - 303 365 - -
Tsu07g03376 731 MobiDBLite consensus disorder prediction 7 28 - -
Tsu07g03376 731 Gene3D - 5 211 IPR036770 -
Tsu07g03376 731 ProSiteProfiles Zinc finger C3H1-type profile. 307 329 IPR000571 GO:0046872
Tsu07g03376 731 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Tsu07g03376 731 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Tsu07g03376 731 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 31 728 - -
Tsu07g03376 731 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 327 IPR000571 GO:0046872
Tsu07g03376 731 Pfam Ankyrin repeats (3 copies) 54 156 IPR002110 GO:0005515
Tsu07g03376 731 SUPERFAMILY Ankyrin repeat 40 171 IPR036770 -
Tsu07g03376 731 SMART c3hfinal6 337 360 IPR000571 GO:0046872
Tsu07g03376 731 SMART c3hfinal6 302 328 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03376 Tsu-Chr7 40222915 40226641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03376 39 724 C2H2 Transcription Factor Family AT5G12850 53.041 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu07g03376 Ank_2 5e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03376 - - ccaj:109796653 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03376 07 40222915 40226641 Tsu07g03376 07 40222915 40226641 ECH