Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03365 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTTTCTGATTGCAGACAAATCGATTTTTTGCCTTTCACATGTGATAGCTGCAATCagGTATATTGTTTGGAGCACCGAAGTTATATTAAACATCATTgtacaaaaccaaacaaaaatgatGTCACAGTTGTTATATGTCCACTTTGTGCCAAAGGGGTTCGTGTAATTCCTGATCAAGATCCAAACATAGTTTGGGAGCTTCATGTCAATACAGATTGTGATCCATCAAATTATGAAAAagtcacaaaaaagaaaaagtgtcCTGTTCCAAGATGTAAAGAGACCTTAGTATTCTCAAACACAATCAAGTGTAGAGACTGTGAGGTAGATCATTGTTTGAAACATAGGTTTGGACCTGATCATAAATGTCCTGGACCCAAAAAGTTGGAAACaagtttttcatttatgagtctTGTGAATAGTAAAGAAGAATCTAAATCCAATTTAAATTCAACTTCAACTACATCATCTACATGGTCTTCAAGCTTTCTTGACTTGGCTTCTAAATTGAGTGGTGAAATTAACCAAGCATGGCGTGGAATAGGACAGAGTAGTGGCAGTGGTAATGGAAATAATCAAATAGAGAAGTGTCCATTATGTGATGCTAAGTTTTCCTCGGCAACTAGTTTGGTGGATCACGCGAAAAAAGTTCATCAAAGGAATGGAAGCAACCGATATGGGGTAAAGAAGGCATCAATCTCTGCATGTCCGAAGTGTAGTAAAGGTTTTTTGGACCCAGTTTCACTTGTGGAACATGTCGAGAGGGATCATGGCGGTAGTTCTTGA 828 0.3587 MGTPEFPDLGKHCSVSDCRQIDFLPFTCDSCNQVYCLEHRSYIKHHCTKPNKNDVTVVICPLCAKGVRVIPDQDPNIVWELHVNTDCDPSNYEKVTKKKKCPVPRCKETLVFSNTIKCRDCEVDHCLKHRFGPDHKCPGPKKLETSFSFMSLVNSKEESKSNLNSTSTTSSTWSSSFLDLASKLSGEINQAWRGIGQSSGSGNGNNQIEKCPLCDAKFSSATSLVDHAKKVHQRNGSNRYGVKKASISACPKCSKGFLDPVSLVEHVERDHGGSS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03365 275 Gene3D - 82 170 IPR035896 -
Tsu07g03365 275 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 275 - -
Tsu07g03365 275 ProSitePatterns Zinc finger C2H2 type domain signature. 250 271 IPR013087 -
Tsu07g03365 275 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Tsu07g03365 275 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Tsu07g03365 275 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Tsu07g03365 275 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Tsu07g03365 275 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Tsu07g03365 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 237 IPR013087 -
Tsu07g03365 275 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 275 - -
Tsu07g03365 275 ProSitePatterns Zinc finger C2H2 type domain signature. 211 232 IPR013087 -
Tsu07g03365 275 Gene3D Classic Zinc Finger 205 275 - -
Tsu07g03365 275 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Tsu07g03365 275 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Tsu07g03365 275 Gene3D - 2 60 IPR035896 -
Tsu07g03365 275 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Tsu07g03365 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Tsu07g03365 275 SMART c2h2final6 209 232 IPR013087 -
Tsu07g03365 275 SMART c2h2final6 248 271 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03365 Tsu-Chr7 40078858 40080617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03365 1 275 C2H2 Transcription Factor Family AT2G41835 61.429 1.28e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g03365 zf-AN1 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03365 - - cam:101511743 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03365 07 40078858 40080617 Tsu07g03365 07 40078858 40080617 ECH
Tsu07g03365 07 40078858 40080617 Tsu01g01861 01 18652867 18655303 PCT