LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g03338	ATGGTGATGATATGGGAAAATCTAACAGTAACAATTGGTGCAgacaagaagaagaagttgcTTGACGGTGTCACTGGTTTTGCTCAACCTGGTAGGATCATGGCTGTTATGGGTCCTTCTGGTTGTGGCAAAACCACCCTACTCACCTCATTGGCtggaacaCATGCTGCAAATGTTGCAGAGGCTGGCAACATTCaaatcaaaggaaaaaggaGAAATTTGTACTCTAAAGAAGTGTCTTTTGTAGGTCAAGAGGAACTTTTCTTGGGAACTTTGACTGTAAAAGAAACCCTCACATATTCAGCAAACATGAGGCTTCCTTCTAAAATGACAAAACAAGAGATAGACAAAGTTGTGGAAGACACAATAATAGAAATGGGACTTGAAGATTGTGCTAATAGCAAAATTGGGAATTGGCATTTAAGAGGTATTAGTAATGGTGAAAAGAAAAGACTAAGCATTGGTCTTGAGATTTTGACACAACCCTTTGTGTTACTTCTTGATGAACCAACTAGTGGACTTGATAGTGCCTCAGCATTCTATGTGATTCAAGCTCTAAGCAACATTGCTTTGAAAGGAAAGATTGTTATTTGCTCAATTCATCAGCCAGGGTGTGAAACTTTCAATATTTTTGatgatttacttttactttcaAGTGGTGAAACTGTTTATTTTGGAGAAGCAAATATGGCTCTAAAGTTTTTTGCTGATGCAGGTTTTCCTTGTCCTATCAAAAGAAATCCTTCAGATCATTTCCTTATGAGCATTAATTTGGATTTTGACTTCATTAATGAAGCTCTTGCAAGATGCCATCCTATATCTTCAAATTCTAGCGTGGGAATGAGAACGGCAGATATTAGAAAGAAACTCATAGAGAGTTACAAAAATTCAGAGTTCATCAATACAAGAAGAAAAATTCAAGAACTAAAAACCAATGTGATGGAAGAGGAAGCAACTAATTCCAATATTATAAGAAGCAATGCCAACTGGTGGAAGCAACTTAGCACATTAACCAAACGGTCTTTCCTTAACATGAATAGGGACTTGGGCTACTACTGGCTAAGGGCAATATTCTACTTACTTACAGGAATTACTATTGGTACCCTCTTTTTTCATATTGGCACTGGCAACTCCTCAATTATGGCCAGAGGAAAGTGTGTATCATTCGTTTATGGTTTCATGATAAGTATGTCATGTGGAGGATTGCCATTTTTCATTGTAGAATTGAAGGTGTTCTATGGTGAAAGATCAAAAGGGCATTGTGGAGAGGCTGCATTTGTAATATCAAACCTTATATCATCATTCCCTTTCCTCCTTCTAGTATCAATCTCCTCTGGAATTGTTATTTACTTCATGGTGCAATTTCATCCTGGTTTTGaaaattgtacatttttttgTATCAACTTATTCTGCTGTCTATCGGTTGTTGAGAGTTGCATCATGGTTGTGGCCGCAATTGTTCCCAATGTTATGACGGGTATAGGAGCAGGGACCGGTTTTATAGTTTTTATGATGATGCCTTCCCAAATATTCAGACCATTAAATGACATTCCTAAGTTCTTTTGGCGCTATCCAATGTCCTTTCTCAGTTTTGCTTCTTGGGCAGTGCAGGGACAATACAAGAATGACATGTTAGGGGTTGAGTTTGATCCTCTACTACCTGGAGGCCCAAAAGTTACTGGAGAACAAATATTGCCAATGGTATTTGGTGTTTCACTAAGTCATGGAAAATGGTTGGACCTAACAATGTTGGTTGTCTTATTATTTCTCCATAGATTGCTTCTTTTCTTGGTGCTTCGATATAACAAAAGAGGAATATCACATTTCCTATGGATTTATGCAAAGGGAAATCTACAATTTGCAAAACGAGGTTTACTTAAGAAAAAACCATCAATGTCTTCTAAGAGACATGAACCAACACGTCCACTATCGTCTCTTGAGAATGCTATAcacaaaaagaatatatatattatattatcacttactaaattaattactaatatttattttatcttattgcAGTCATACCTTGCTCAAGAAGATTATTTCTTGGGAACTCTAACAGTGAGAGAAACCCTCACATACTCTGCACATTTGAGACTCCATGCTAACATGACCAAACTTGAAATTGGTAATGTGGTAACAAAAACAATAGCTGAAATGGGTTTGGAAGACATTGAAGATAGTAGAATTGGGAATTGGCATTTGAGAGGCATAAGTAATGGAGAGAAAAGAAGACTTAGCATAGGAATTGAGCTATTAACACAACCTCACATAATGTTTCTTGATGAACCAACAAGTGGATTAGACAGTGCAGCTGCTTTCTATGTTGTTTCATCTCTTAGAAACATAGCTCATGATGGAAGAATTGTTATCATCTCTATTCATCAACCAAGTGATGAAGTTTTCAATCTCTTTGATGATCTCATTATTCTTGCAGGAGGTCAAACTGTTTATTTTGGAGAAATCACCATGGCACTAAAGTTCTTTGCAGATGCAGGGTTTCCTTGTCCAACAAGAAAAAACCCTCCAGAGCACTTCCTTCGCTGTGTTAGCCCTGAGTTTGATAGTGTTGCAACCTTTGTACAATCTAAAAACATCAAtGAAGCCTCATCAAAATGGAATTCCCAAATTACTATGACAACAGAGGAGATTAAATTTAGGCTTCTAGAGAACTACAAGAATTCCATGCATTCCgcaaatacaaaaagaaaaataagacaAATCAAATTAAGGGAAGAAATTTTCATTGGGAGGACACATACAAGTAGGTTGAAGCAATTGTGCATACTGACAAGTAGATCATTCCTAAATATGACCAGAGACATTGGTTACTACTGGTTGCGAATTTTATTCTTTATCTTGGCATCAGTAAATGCtggttttatttattacaaCATTGGATCAAGTAATGAAGCAATCTTATCAAAAGGCAAGTTTTATGGATTTGTCTATGGCTTCATGATCTTCATCTGTGTAGGAGCCTTACCCTTTTACCTCGAGGAATTGAAGGTGTTCAAACGTGAAAGGTTTGGGAGGCATTATGGGGAGGACATTTATGTATTGTCACATTTCCTATCATCATTACCTTTTGTCCTTGCAACTTCACTCTCTTCAGGAACAATACTTTACTATATGGTGAAATTTCATGAAGGATTCTCTCATTACTGCTATTTCTGCATGAACCTATTCTTATGCATTTCCGTGGCAGAAGGCTGCATGTTATTTGTTGCAGCACTTGTGTCCAATCAACTAGTAACCATAGTAACAGCAGCTGGTGTAACTGTATTTATGTTGATGCCATCTAGTATATTCAGAAGGCTAACAGACCTTCCAAAATTCTTCTGGCGCTACCCGATGTCTTACATTAGCTACATTTCATGGTCAGTACAGGGGCAGTTCAAGAATGACATGATTGGACTAGAATTTGAACCACTAGTGGCAGGGGATCCTAAGCTAAAGGGAGAAGTGATGCTTCAAGATACATTTGGAATTCAAACAGACTATTCAAAATGGTGGGACTTAGCAGCTCTTGTCTTCTTATTAATATCTTATAGATTTCTCTTTTTCTTGGCTCTTAAGCACAAGGAGAGAGCTTCATCACTATTACAAACCACAAGGACTTACTTGGACATTTTACTCACAAGAACCCCATTGAAGGACACAAATGTTTCTTCTAGGAGACACCAACCCCTCTATCCTTTGTCAGCTCAAGAGGGTCTTTCCTCTCCAATGTCTTAG	3741	0.3617	MVMIWENLTVTIGADKKKKLLDGVTGFAQPGRIMAVMGPSGCGKTTLLTSLAGTHAANVAEAGNIQIKGKRRNLYSKEVSFVGQEELFLGTLTVKETLTYSANMRLPSKMTKQEIDKVVEDTIIEMGLEDCANSKIGNWHLRGISNGEKKRLSIGLEILTQPFVLLLDEPTSGLDSASAFYVIQALSNIALKGKIVICSIHQPGCETFNIFDDLLLLSSGETVYFGEANMALKFFADAGFPCPIKRNPSDHFLMSINLDFDFINEALARCHPISSNSSVGMRTADIRKKLIESYKNSEFINTRRKIQELKTNVMEEEATNSNIIRSNANWWKQLSTLTKRSFLNMNRDLGYYWLRAIFYLLTGITIGTLFFHIGTGNSSIMARGKCVSFVYGFMISMSCGGLPFFIVELKVFYGERSKGHCGEAAFVISNLISSFPFLLLVSISSGIVIYFMVQFHPGFENCTFFCINLFCCLSVVESCIMVVAAIVPNVMTGIGAGTGFIVFMMMPSQIFRPLNDIPKFFWRYPMSFLSFASWAVQGQYKNDMLGVEFDPLLPGGPKVTGEQILPMVFGVSLSHGKWLDLTMLVVLLFLHRLLLFLVLRYNKRGISHFLWIYAKGNLQFAKRGLLKKKPSMSSKRHEPTRPLSSLENAIHKKNIYIILSLTKLITNIYFILLQSYLAQEDYFLGTLTVRETLTYSAHLRLHANMTKLEIGNVVTKTIAEMGLEDIEDSRIGNWHLRGISNGEKRRLSIGIELLTQPHIMFLDEPTSGLDSAAAFYVVSSLRNIAHDGRIVIISIHQPSDEVFNLFDDLIILAGGQTVYFGEITMALKFFADAGFPCPTRKNPPEHFLRCVSPEFDSVATFVQSKNINEASSKWNSQITMTTEEIKFRLLENYKNSMHSANTKRKIRQIKLREEIFIGRTHTSRLKQLCILTSRSFLNMTRDIGYYWLRILFFILASVNAGFIYYNIGSSNEAILSKGKFYGFVYGFMIFICVGALPFYLEELKVFKRERFGRHYGEDIYVLSHFLSSLPFVLATSLSSGTILYYMVKFHEGFSHYCYFCMNLFLCISVAEGCMLFVAALVSNQLVTIVTAAGVTVFMLMPSSIFRRLTDLPKFFWRYPMSYISYISWSVQGQFKNDMIGLEFEPLVAGDPKLKGEVMLQDTFGIQTDYSKWWDLAALVFLLISYRFLFFLALKHKERASSLLQTTRTYLDILLTRTPLKDTNVSSRRHQPLYPLSAQEGLSSPMS	1246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g03338	1246	Pfam	ABC transporter	22	172	IPR003439	GO:0005524
	Tsu07g03338	1246	PANTHER	CASSETTE TRANSPORTER, PUTATIVE-RELATED	674	1204	-	-
	Tsu07g03338	1246	Pfam	ABC transporter	675	767	IPR003439	GO:0005524
	Tsu07g03338	1246	Pfam	ABC-2 type transporter	927	1132	IPR013525	GO:0016020\|GO:0140359
	Tsu07g03338	1246	Pfam	ABC-2 type transporter	333	538	IPR013525	GO:0016020\|GO:0140359
	Tsu07g03338	1246	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	1	623	-	-
	Tsu07g03338	1246	PANTHER	CASSETTE TRANSPORTER, PUTATIVE-RELATED	1	623	-	-
	Tsu07g03338	1246	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	3	244	IPR003439	GO:0005524
	Tsu07g03338	1246	Pfam	ABC-2 type transporter	201	253	IPR043926	GO:0140359
	Tsu07g03338	1246	Pfam	ABC-2 type transporter	796	877	IPR043926	GO:0140359
	Tsu07g03338	1246	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	674	1204	-	-
	Tsu07g03338	1246	SMART	AAA_5	30	221	IPR003593	-
	Tsu07g03338	1246	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	579	839	IPR003439	GO:0005524
	Tsu07g03338	1246	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	674	828	IPR027417	-
	Tsu07g03338	1246	Gene3D	-	2	235	IPR027417	-
	Tsu07g03338	1246	Gene3D	-	660	830	IPR027417	-
	Tsu07g03338	1246	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	4	233	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g03338	Tsu-Chr7	39783954	39834084	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g03338	31	226	Calmodulin-binding Proteins	AT2G36910	25.373	1.03e-08	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g03338	-		K05681	gmx:100802207	926.006