Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03317 ATGGATCACAGAACCTACTCCactctcttcaatcttcagTCTTTGGTGAACTTTGAACTTCCAGAACaagatgatgattttgaatATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACATCAGAGGTGGGGCAATTGATAATAATGGGAATGGAAATGTGTCGGGAAGGGAATTGAATTTGTTGAAGAAGAGGAGGTTGTCTCGAAACAGTGAAAACGAGGAAAAGAGTGGTTTTGACGGGACACGTATGATGGAGGAACGATACCGATCAATGCTTGGAGATCATATTAAGAAATACAAGAGGAGGTTTAAGGGTGCTTCGAGTAATCCTGGCTCGAGTCAGGTTGCTGTTCCATTTGTTAAAAGTAACAATGGATTAAAAGCTCCCAAGCTTGGGAATGAGCACAGGAGAGGGTTGCGTGATGAAGAGACTATATCTGAATGGATAAATAATTCTAATGCTCGGAAACCGGGGAACTTTCTTGATACAGATTTCATACAGCAACATCGCACTGATAGGGTTATGTATGAACCTGCATCAATGTATATTGGGGATGGTATAGCTTATAAGATTCCTCCAATTTATGATAAGTTGGCAGCAACGGTGAACCTTCCAAGCCTCTCAGATATACACATTGAGGATTTTTACCTAAAAGGTACATTGGATTTGGGATCCTTGGCTGAAATGATGGCATCTGATAAAAGGCCTGGGAATAGAAACCGAGCAGGCATGGGGGAAACTATATCCCAATATGAATCACTTCAAGCGCGTCTACAGGACACACCAGCTTCTAATTCATCTCACAAATTCAGTTTGAAAATATCCGAGGCTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCTGGAAGCATAAAGCGATATATTTTATCTGAGGGTGGTATATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGAGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGaaacaaaagataaagaaaGACCCTGCGTTAATAGAGAAAGAGGAAATGGAAAAATTTGGAAGGATTTGGGTAAATATTGTGAGAAGAGACATACCAAGACATCATAGGAATTTTACTACTTTTCATCGAAAGCAGCTCGTTGATGCCAAGAGGGCCTCGGAAAACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCAAGCATACGCACCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAACGAATAGATAAGGAGAtgTTAGAAGTGAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAGCAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTAAATTTTCTTATACAACAGACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAATATCTTCAGAAGCTCTATCCATGGCGGATGAAAGTACAAATGAtgaaaatgcactgatcaactCTCTAGCAGATGATCTTAACGGGGAGGAAGATCCCGAAGAAGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTAACAAGTGCTTTTGACACTGAATGCTTGAGGTTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCAAGTAATATTGACTTGAAAACCCCCTCCACCATGCCCGTGGCATCGACAGTTCGGACACCTGAATTATTTAATGGGATTCTCAAAGATTATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCCGACGAGATGGGACTTGGAAAGACAATTCAGGCTATGGTTTTCTTAGCTCATTTAGCCGAGGAGAAAAACATATGGGGACCTTTTTTGATTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGTTTCTGCCCTGAACTGAAAGTACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATGAATCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCGCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAAGCAATTAAAAGTGCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCTGTTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGATAGCCACGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCACGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGCTGCGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGCAAAACTGAAATTACCGTGCACTGCAAGTTAAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAAAATCCTGAATTTAATGAACATTGTTATTCAACTGAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCTCCTCCTCCGTTTGGGGAGTTAGAGGATGTATATTATTCTGGTGGCCATAACCCCATCTCATATGAGATACCAAAACTTGTGTATCAAGAAATTATGCGGAGTTCTGAAACTCTCGGTTCAGCTGTTGGTCATGGTATCTGCAGAGAATCTTTTCAgaagtattttaatatttttagaccAGAAAATGTTTATCAATCTGTCTTTTCAGAAGATATGCATGTTAAAAGTGGAACCTTTGGATTTACTCATTTGATGGATTTATCTCCACAAGAGGTGACATTTCTTGTTACTGGTTCTTTTAtggagaaattattattttctatgaTGAGGTGGGAACAAAAATTCATCAATGAAGTTGTAGAATTTCTTATGGAGACCATAGATGATGATTTGGAATGTAGTTACCTTGAAAAAGACAAAGTGAGAACTGTCACACGTATGTTATTGGTGCCGTCCAGATCTGAGACTAAGTTTCTACAGAACAGATTGCCAACTGGACCCAGCCATGCTCCTTTTGAGGCTTTAGTTGTCCCACATCAGGAGAGGATTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACATATATCCCACAAAGTAGAGCACCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTACTATAAGATGATTGAGGAACTACATGATCCATGGGTTAAGAGGTTGTTTGTGGGGTTTGCACGTACGTCTGATTGTAATGGGCCTAGAAAGCCAGATGGTTCTCATCACTTAATTCAAGAGATCAATTCTGAACAACCTGTTTGTAAACCTGCTCTTCAGTTAACGCACAGTATTTTTGGGTCTTCTCCACCTATGCGAAATTTTGATCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACacttgatatattattgaaacgTTTACGGGCAGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAActatagaaaatataaatattttagacTTGATGGGTCAACATCTATTCAGGATCGCAGAGACATGGTCAGAGACTTTCAGCATAGGCCTGATGTTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCAACGTTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTCGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGcagaaatttcaaaatataactGTCCAGGTAAGGgataagcaaaagaaaaaacagcCTTTGaagggtattttggtaaatGAAGATGGTGATGCTTCTCTGGAAGATATATCAAATTCTGTAGCCCTGGGTGCAACCGATGATCTTGCCGTGGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTACCACAGATAAGAAAACTTTGAGGCCAAAGAATTCTCAGAAGACGAGTGAATTTGATGGCATGCCTATGGACAACGAATTGGATGATGTCCACTTAAATACTGATCCTGTAGTTCAGAAACCCAAGAGACCAAAgagaataaagaaaaatgtgaatgaaatgtatgaagatACTTTTCCTGGGACAGCTAACGTCGTGGCCCCAGAGCAGGCCCAATTTCAACCTCCACACGAAGAAGGTTCCAAAATAGAATCAGGCCAAGACACCtaa 4569 0.392 MDHRTYSTLFNLQSLVNFELPEQDDDFEYYGNSSQDESRNIRGGAIDNNGNGNVSGRELNLLKKRRLSRNSENEEKSGFDGTRMMEERYRSMLGDHIKKYKRRFKGASSNPGSSQVAVPFVKSNNGLKAPKLGNEHRRGLRDEETISEWINNSNARKPGNFLDTDFIQQHRTDRVMYEPASMYIGDGIAYKIPPIYDKLAATVNLPSLSDIHIEDFYLKGTLDLGSLAEMMASDKRPGNRNRAGMGETISQYESLQARLQDTPASNSSHKFSLKISEADLNSSIPEGAAGSIKRYILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPALIEKEEMEKFGRIWVNIVRRDIPRHHRNFTTFHRKQLVDAKRASENCQREVKMKVSRSLKWTRTASIRTRKLARDMLLFWKRIDKEMLEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSISSEALSMADESTNDENALINSLADDLNGEEDPEEVELKKEALKAAQEAVSKQKMLTSAFDTECLRLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGILKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKVLPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVISELTSKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQEIMRSSETLGSAVGHGICRESFQKYFNIFRPENVYQSVFSEDMHVKSGTFGFTHLMDLSPQEVTFLVTGSFMEKLLFSMMRWEQKFINEVVEFLMETIDDDLECSYLEKDKVRTVTRMLLVPSRSETKFLQNRLPTGPSHAPFEALVVPHQERILSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDCNGPRKPDGSHHLIQEINSEQPVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRPDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFQNITVQVRDKQKKKQPLKGILVNEDGDASLEDISNSVALGATDDLAVDPEGSKSSNKKRKATTDKKTLRPKNSQKTSEFDGMPMDNELDDVHLNTDPVVQKPKRPKRIKKNVNEMYEDTFPGTANVVAPEQAQFQPPHEEGSKIESGQDT 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03317 1522 MobiDBLite consensus disorder prediction 1457 1474 - -
Tsu07g03317 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1376 IPR027417 -
Tsu07g03317 1522 SMART helicmild6 1225 1308 IPR001650 -
Tsu07g03317 1522 Gene3D - 1152 1436 IPR027417 -
Tsu07g03317 1522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1199 1349 IPR001650 -
Tsu07g03317 1522 Pfam DNA-binding domain 343 471 IPR020838 GO:0003677
Tsu07g03317 1522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 764 IPR014001 -
Tsu07g03317 1522 SMART ultradead3 577 772 IPR014001 -
Tsu07g03317 1522 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Tsu07g03317 1522 Coils Coil 420 459 - -
Tsu07g03317 1522 MobiDBLite consensus disorder prediction 1416 1483 - -
Tsu07g03317 1522 MobiDBLite consensus disorder prediction 33 56 - -
Tsu07g03317 1522 Gene3D - 555 833 IPR038718 -
Tsu07g03317 1522 CDD SF2_C_SNF 1187 1319 - -
Tsu07g03317 1522 ProSiteProfiles DBINO domain profile. 348 473 IPR020838 GO:0003677
Tsu07g03317 1522 PANTHER CHROMATIN-REMODELING ATPASE INO80 9 1484 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Tsu07g03317 1522 PANTHER HELICASE SRCAP-RELATED 9 1484 - -
Tsu07g03317 1522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 809 IPR027417 -
Tsu07g03317 1522 MobiDBLite consensus disorder prediction 1497 1522 - -
Tsu07g03317 1522 Pfam Helicase conserved C-terminal domain 1199 1308 IPR001650 -
Tsu07g03317 1522 MobiDBLite consensus disorder prediction 28 58 - -
Tsu07g03317 1522 Pfam SNF2-related domain 596 883 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03317 Tsu-Chr7 39580662 39593971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03317 634 882 RAD5 or RAD16-like Gene Family AT1G61140 23.871 8.85e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu07g03317 SNF2_N 2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03317 K11665 - gmx:100780615 2499.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03317 07 39580662 39593971 Tsu07g03317 07 39580662 39593971 ECH