Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03299 ATGTACCATTCCTTACAACATCAGATTAACAACATTAATGATAATGACAAATCAAACGAGTGGGCATGGGATGAAGATAGACACTTTGACGTAAACCTTCTATTAGACCAACTCTTAGAATATCCGGAGGAGGGCGAATGGGATAAACCGGCTATTTTTGAACGATCTACGGTAGAAGTTAAAGAGCATGCTCAGCTGGTCAAAGAATGTCACTTCAAGTTGTCAACATACTCAGATAATTGTATTACAAAAGACAATGCTTCCATCAATGAAAACAAAGCTACTCCACTTAAGAACAAGACCAAGAAGGTGTTTCATTGGAAAGAAGAAGAACACAGgttATTTTTAGAGGGGCTTGAAAGGTACGGCAGAGGAAATTGGAAAGCGATTTCAAATCATGTCGGTACAAAATCTTATACTCAAGTTGCTAGTCACGCTCAGAAGCATTTCATTCGAGTAAATATTGATCAACAGAGTGATAATTCATCaaaaaagaggaaaagaaaaagcaaGTTTGACACAATCAAATGGAATGGAGATTTCCACCCTCTTCTATACAGGGATTACAttcctcctcctccttcttCAAATGTTGAAACACAACCAATCGTAAAGCAGTTACTACAACAATTTCAACAAGCCCAAGGAGCATTAATATAG 660 0.35 MYHSLQHQINNINDNDKSNEWAWDEDRHFDVNLLLDQLLEYPEEGEWDKPAIFERSTVEVKEHAQLVKECHFKLSTYSDNCITKDNASINENKATPLKNKTKKVFHWKEEEHRLFLEGLERYGRGNWKAISNHVGTKSYTQVASHAQKHFIRVNIDQQSDNSSKKRKRKSKFDTIKWNGDFHPLLYRDYIPPPPSSNVETQPIVKQLLQQFQQAQGALI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03299 219 CDD SANT 107 150 IPR001005 -
Tsu07g03299 219 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Tsu07g03299 219 Gene3D - 105 155 - -
Tsu07g03299 219 PANTHER TRANSCRIPTION FACTOR KUA1 19 210 - -
Tsu07g03299 219 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Tsu07g03299 219 Pfam Myb-like DNA-binding domain 107 149 IPR001005 -
Tsu07g03299 219 PANTHER TRANSCRIPTION FACTOR SRM1 19 210 - -
Tsu07g03299 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 154 IPR017930 -
Tsu07g03299 219 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 152 IPR006447 GO:0003677
Tsu07g03299 219 ProSiteProfiles SANT domain profile. 107 154 IPR017884 -
Tsu07g03299 219 SMART sant 103 152 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03299 Tsu-Chr7 39341652 39342706 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03299 107 152 EF-hand Containing Proteins AT3G07740 36.957 2.89e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu07g03299 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03299 - - mtr:MTR_5g075790 156.762