Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03256 ATGGTCGTCAATAGATTCAAGAGAGAGCAATGTGACCGAACTAAGCATGATTCTAGCTTCTCCCGCTGGAAGATTCTTATTGGTCCTTCTGATTGGGAAGATCATTCCAAAGGAAAGGAAGGATCTACCAGATACAGGATTCAAAACCTTCCTCAGAAATTGGGTCCGGGAGTGTACGAGCTTGGTGTAGCTGTGTCGAATAGTGGATTGGGGCGTGAAATTTACAAGCTTACCACTGACCATCGTCGCGTAGTTGTGGTTTACCTTGGAAAAGCTGACAACGTGAGAGCAAGACTCCAGTGTTATGGAAGGACTGGAGCTCATTTGAGTAATAGCTGTTCATCGGATGAATCTTCTCTTCAAACGGGAAGGTCATTGTTTCAGGAGATATTTTCGCAAGGTTTTCCAATTGTTTATAGATGGGCTCCTATGCAAAACGAGGGAGATGCCCTAAGAACAGAAGCTCAGCTGCTTAATACATTTGATTATGCATGGAACACAATCAGTAATGGTACACGGCGGCCTGATGATATTCTTCAAATGCTCAACAAACTTACGTCAGGTTCTAGAACATTTTCAGATGTCACCAAATTGCTTCTTCCTTTCACTCAGAGGAAAGTGGGGATACCAATTAAATCTAGCAAACTGCCTCCGACAGATGACAAATTAGATGAAGCTGACAATGGTAGCTATAATATCCTATCCCGTGTGTTCAAATTCAACAGGTCGCATCCTAGGATAGTTCAGGATACCACTAGTAGGACCATTCATGAGAATACAAAAATTTGCGGCGTCATATTGGCTGACGGTTCTATTTGTCAGAGGCCACCGGTTGAAAAAAGAGTGAGGTGTGCTGAACACAAAGGAATGAGAATAAAAGTTTCCACTGCCAAAGCAATCAGAGCACCCAAGTTAGAATTAGAAACTATTGTAGGTAATGCCTATAGGTACCAAAATTTTAGCCAAGATGTAGAAGAGCCTCCACAAAGAAAGGTTGAGAGTCATGTTCAGGAGAGTTTCACCAAAACCATTATTTGTGGAATCATCTTGGATGATGGATCTACTTGCCCGAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCATAAAGGGAGGAGAATACGTGGAAATcagaaataa 1143 0.4199 MVVNRFKREQCDRTKHDSSFSRWKILIGPSDWEDHSKGKEGSTRYRIQNLPQKLGPGVYELGVAVSNSGLGREIYKLTTDHRRVVVVYLGKADNVRARLQCYGRTGAHLSNSCSSDESSLQTGRSLFQEIFSQGFPIVYRWAPMQNEGDALRTEAQLLNTFDYAWNTISNGTRRPDDILQMLNKLTSGSRTFSDVTKLLLPFTQRKVGIPIKSSKLPPTDDKLDEADNGSYNILSRVFKFNRSHPRIVQDTTSRTIHENTKICGVILADGSICQRPPVEKRVRCAEHKGMRIKVSTAKAIRAPKLELETIVGNAYRYQNFSQDVEEPPQRKVESHVQESFTKTIICGIILDDGSTCPRQPVKGRKRCHEHKGRRIRGNQK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03256 380 SMART uri_9 74 171 IPR000305 -
Tsu07g03256 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 325 379 - -
Tsu07g03256 380 MobiDBLite consensus disorder prediction 359 380 - -
Tsu07g03256 380 Pfam GIY-YIG domain-containing protein 20 179 - -
Tsu07g03256 380 MobiDBLite consensus disorder prediction 361 380 - -
Tsu07g03256 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 325 379 IPR038909 GO:0003677|GO:0006355
Tsu07g03256 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 2 301 - -
Tsu07g03256 380 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 2 301 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03256 Tsu-Chr7 38919722 38922854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03256 1 375 HRT Transcription Factor Family AT5G56780 42.636 4.40e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Tsu07g03256 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03256 - - lang:109350609 462.996