Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03254 ATGTCCCTTGAAGACTCACTAAGATCTCTTTCTTTAGATTACTTAAACCTTTTAATCAACGGACAAGCCTTCAGCGACGTCGTTTTTAGCGTCGAAGGTCGATTAGTTCATGCTCATAGATGTATCTTAGCTGCAAGAAGTTTATTCTTCAGAAAATTCTTTTGTGGGCCAGACCCACCTTCTGGTCTTGATCCATCAGGAAATCGAGTTAACTCATCATCAACACGTTCTGGTGTTATTCCTGTTAATTCAGTTGGTTATGAAGTTTTCTTGTTGATGCTTCAGTTTCTTTATAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGGCCTAATTGTGGTGACCGTGGTTGTTGGCATACACATTGTACCTCAGCTGTTGATCTTGCTCTTGATACTCTTGCCGCCGCTCGATACTTCGGCGTTGAACAGCTAGCATTGCTCACTCAGAAACAACTAGCGAGCATGGTGGAAAAAGCCTCCATTGAAGATGTAATGAAAGTGCTACTAGCATCAAGAAAACAAGACATGCACCAACTATGGACCACATGTTCCCACCTTGTAGCAAAGTCAGGTCTTCCACCAGAAGTTCTAGCAAAACATCTCCCTATTGACATCATAGCCAAAATCGAAGAGCTTCGAATCAAATCATCCTTATCACGCCGCTCGTTAATCcctcatcaccatcatcacccTCACCACCATGACCACCTTACCGCAGCAGCCGACCTAGAAGACCAAAAAATCCGCCGAATGAGGCGTGCCCTCGATTCCTCAGACGTCGAGCTAGTAAAACTAATGGTAATGGGAGAAGGTCTTAACCTCGACGAAGCATTAGCATTACCTTATGCTGTTGAGAATTGTAGTAGAGAAGTTGTGAAAGCCTTATTAGAACTCGGTGCAGCCGATGTTAACTTCCCCGCCGGTCCAACCGGTAAAACTCCACTCCATCTCGCAGCCGAGATGGTCTCTCCAGACATGGTTGCAGTATTACTTGACCACCACGCCGATCCAAATGTAAGAACAGTCGACGGTGTTACGCCTTTGGACATTTTAAGAACCCTAACTTCAGATTTTCTTTTCAAAGGTGCTGTCCCTGGATTAACACACATAGAACCAAACAAACTAAGGTTATGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTATGTCAAGAGAAGAAGGGAATAATAATGCTAACAATACATCTTCTTCAGCAACAAACATGTATCCTcataatatgaatgaagatcatcatcatcatagccACAACAGCAACAATAACATGGTTTATCTTAACCTTGGTGCTACTCAAATGAATTCAAGAATTGATTCTGGTGATGATGATAGTAATCATAATAATCAAAGGGAAAGTATCAACCACTCCAtgtatcatcatcaacatcattctCATGACTACTAA 1428 0.3999 MSLEDSLRSLSLDYLNLLINGQAFSDVVFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPSGNRVNSSSTRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGDRGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIIAKIEELRIKSSLSRRSLIPHHHHHPHHHDHLTAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNFPAGPTGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNNANNTSSSATNMYPHNMNEDHHHHSHNSNNNMVYLNLGATQMNSRIDSGDDDSNHNNQRESINHSMYHHQHHSHDY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03254 475 SUPERFAMILY Ankyrin repeat 272 356 IPR036770 -
Tsu07g03254 475 ProSiteProfiles BTB domain profile. 25 106 IPR000210 GO:0005515
Tsu07g03254 475 MobiDBLite consensus disorder prediction 442 475 - -
Tsu07g03254 475 MobiDBLite consensus disorder prediction 395 414 - -
Tsu07g03254 475 Gene3D Potassium Channel Kv1.1; Chain A 4 192 IPR011333 -
Tsu07g03254 475 Pfam Ankyrin repeats (3 copies) 261 343 IPR002110 GO:0005515
Tsu07g03254 475 Pfam BTB/POZ domain 16 108 IPR000210 GO:0005515
Tsu07g03254 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 470 IPR044284 GO:0099402
Tsu07g03254 475 Gene3D - 238 361 IPR036770 -
Tsu07g03254 475 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Tsu07g03254 475 Pfam Domain of unknown function (DUF3420) 194 255 IPR024228 -
Tsu07g03254 475 MobiDBLite consensus disorder prediction 395 430 - -
Tsu07g03254 475 ProSiteProfiles Ankyrin repeat region circular profile. 313 343 - -
Tsu07g03254 475 PANTHER REGULATORY PROTEIN NPR5 1 470 - -
Tsu07g03254 475 CDD BTB_POZ_NPR_plant 8 159 - -
Tsu07g03254 475 SMART BTB_4 25 159 IPR000210 GO:0005515
Tsu07g03254 475 MobiDBLite consensus disorder prediction 447 475 - -
Tsu07g03254 475 SMART ANK_2a 313 342 IPR002110 GO:0005515
Tsu07g03254 475 SMART ANK_2a 278 308 IPR002110 GO:0005515
Tsu07g03254 475 SUPERFAMILY POZ domain 8 157 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03254 Tsu-Chr7 38899721 38903254 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu07g03254 BTB 8.9e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03254 K14508 - gmx:100816086 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03254 07 38899721 38903254 Tsu07g03254 07 38899721 38903254 ECH