Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03232 ATGCTTCAACAACAGATTCAGAATAATATTGGAATGGAAAATAACTCAGAACTCTTTCAATTCATTGTTGCTAATAACCCTTCATTCTTTGACTATTCAACTCCTACTATGATGCAACAAAGTTTCTGTAGTTCTTCTGATAATAATAACTATTACCACCCCTTTGAAGCTTCTGAAATTACTGATACACCCTCCCAACAAGATAGAGCTTTAGCTGCTTTGAAGAATCATAAAGAAGCTGAGAagagaaggagagagagaatCAATTCTCACCTTGATCATCTTCGTACTCTTCTCCCTTGCAACTCCAagACAGATAAGGCTTCACTTCTTGCAAAAGTTGTCGAGCGAGTGAAAGAATTAAAGCAACAAACATCTGAAATCACAGAAATCGAAACAGTTCCATCTGAAACCGATGAAATAACCGTCATCTCAGCTGGTGGAGACATCACCGGAGAAGGCAGACTCATATTCAAAGCTTCATTATGTTGCGAGGATCGTTCTGACCTAATCCCAGACCTAATCGAAATTCTCAAATCTCTTCGACTCAAGACTATCAAAGCCGACATTTCTACACTCGGCGGTAGAACGCGAAATGTTCTTGTTGTTGCTGCTGATAAAGAACATAATAGCATTGAATCAATTCATTTTCTTCAGAATTCGCTTAGGTCTTTGTTGGATAGATCTAGTAATTGTAATGATCGGTCAAAAAGGCGTCGTGGGTTGGATCGAAGAATGATGCCTTAA 747 0.3748 MLQQQIQNNIGMENNSELFQFIVANNPSFFDYSTPTMMQQSFCSSSDNNNYYHPFEASEITDTPSQQDRALAALKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSEITEIETVPSETDEITVISAGGDITGEGRLIFKASLCCEDRSDLIPDLIEILKSLRLKTIKADISTLGGRTRNVLVVAADKEHNSIESIHFLQNSLRSLLDRSSNCNDRSKRRRGLDRRMMP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03232 248 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Tsu07g03232 248 MobiDBLite consensus disorder prediction 230 248 - -
Tsu07g03232 248 SMART finulus 78 127 IPR011598 GO:0046983
Tsu07g03232 248 Gene3D - 67 132 IPR036638 GO:0046983
Tsu07g03232 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 129 IPR036638 GO:0046983
Tsu07g03232 248 PANTHER TRANSCRIPTION FACTOR BHLH30 14 247 IPR045847 GO:0003700|GO:0006355
Tsu07g03232 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Tsu07g03232 248 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 14 247 - -
Tsu07g03232 248 MobiDBLite consensus disorder prediction 229 248 - -
Tsu07g03232 248 CDD bHLH_AtAIG1_like 67 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03232 Tsu-Chr7 38472353 38474046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03232 18 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 59.633 8.22e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g03232 HLH 6.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03232 - K22484 pvu:PHAVU_001G121200g 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03232 07 38472353 38474046 Tsu07g03232 07 38472353 38474046 ECH