Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03227 atgttggagggaagaagaagaagaaagcctCTGATTTTGTGTTCAACTAAAAATGTAATCAATTCCGTATTGAACAAGTCTTCAACCAATGAATTCCCTAAATTGCATTTACCGGTTGGAATTCTCCGATTTTCCAACAATTTTCCTTCTTTTGATCACTCTGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAACACTTTCCATCACTTCTGGTTCTCCGGTTATGGTCAAGAATGTTGAAATGAACACACAGAGAATTGCAGTGGCTATTGCTCTGGACCCTCCTGGCAGTGACACCACTACCCTTGATATAGATCACTCACCATCCTCTTCTTCTAGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTCTAAGTGGCCCCTTGTTAAATGGTGAAATTGCGTATTTGTCTCCTCTTTTGGCCTTCAATCTTAACTTGCACATTTCCTGTTTGAAATCTATTATTCACAATGGTCAAGATGCTTTGTCGTCTTATTTCAAACCTCAATGCCAAGTGGGTGATGAAGATGCAGCTAAAAGCATTGAAGATTCTTTCATTAATATAGAGTTGGCGCCTCTCGCTGAACCTCCCAGATTTGCCTCCCTTCTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCGTCCTTGATTCCATTAAACCAACTTCAGATGTTGAATCCAAAGAACGACAAGACATGATTGACTTGGCATTGCAGAAGTATTTTGAAGTCGATAGATATTTGTCAAGTGGAGATATTTTCGGAGTTAACATTAGTTGGAACTGTAATTCCACTATTTGCATTCCTTGTAAcaataaaacacacaataaaaaTGACAACTTTATCTGTTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTTCGGGTCAATAAAACCTTAACTGCTTTGGTGTTAGTAGGGAGTTCCCCATCTGCCCTTCCTCCGGATTTGTTAATTGCTGGACCAGAAGGGACTGTGCCTTTGCAAAGGGACACAGTGAAGACCTTGGCTTCAATACTAGCACCAACTTTATGTCCATCGGCGCTGTCTTCCAAGTTTAGAGTTTCGGTGTTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGACGACTAGGTCTGCATGTGGTGGAATATAACTGTCATGATCTAATGGGCTCCGAGAGAACATCTGTTGCTCTCTCTCAAGCTTTCAAGACCGCTCAAAGGTTATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTTTTTCGAGATTCGCAATCACCCGAGGTTTCACAAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTCATTAGGAAATTTACTGAGCCAGTTGGTGAACATGGTGATAGTAACTCCTTGGTGAAATCAAACGGAGAATCTGTGGAGAAGACTTCTGAAAAGATTAGTGGGCACCAGGTCCTGTTGATTGCGGCTGCTGACAGTTCAGAGGGTATACCTTCAACTATCAGACGCAACTTTAGCCATGAAATAAACATGGGAACTTTAACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTTCAAAATGTTTATGGACTCCACTCTAATACTGATTTAGAGGGTTATGTAAAAGAAATAGTTGGACAAACATCTGGTTTCATGCCCAGGGATATATGTGCTTTAATTGCGGATGCTGGTGCCAGTTTATTTCCCAGGAGCAATGCCGAAGTAGACAAAGATGAACCTGAAGATGCAGATAGTTCTCTTAGTTCCAAGGTGACGGAGGACAACAACCAGCCAAAAGTTTCAGCTCTGAAACCTGGGAAAGAAGACTTGGTGAATGCTTTGGAACgatcaaagaaaagaaatgcaTCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCTTGCATAAAGATCTATTTGCATCCGGATTACGCAAGCGGTCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACTTTATTAGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATAGGAGAGTCCGAGAAGAATGTTCGAGACATTTTTCAGAAgGCCAGATCAGCACATCCATGTGTCATATTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGAGCTTCTGGAGATTCTGGAGGTGTTATGGACAGAGTTGTTTCACAGATGCTTGCAGAAATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGATCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGTTATATGTTGGAGTTAACTCCGATGCATCATACAGACAGAGGGTACTGAAAGCTCTAACGAGAAAGTTCAAATTGCATGAAGATGTTTCACTTTACGACGTTGCAAAAAAGTGTCCGCCAAACTTCACCGGCGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCTCGCGGCAAAGCGCAGGGTTTTGAATGCAGATCCAGAGTCCTCCAACCCAGATAATGAAGCAGATTCTATTGTTGTTGAATACGACGATTTTTTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCCACAGCTGAGCTTAAGAAGTATGAGCTTCTTAGAGATCAGTTTGAAGGCACATCTAAATGA 2775 0.4079 MLEGRRRRKPLILCSTKNVINSVLNKSSTNEFPKLHLPVGILRFSNNFPSFDHSALIALSTSLLKTLSITSGSPVMVKNVEMNTQRIAVAIALDPPGSDTTTLDIDHSPSSSSRIMLVFPSCDFPLSGPLLNGEIAYLSPLLAFNLNLHISCLKSIIHNGQDALSSYFKPQCQVGDEDAAKSIEDSFINIELAPLAEPPRFASLLRVAFVKIPECGVLDSIKPTSDVESKERQDMIDLALQKYFEVDRYLSSGDIFGVNISWNCNSTICIPCNNKTHNKNDNFICFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLIAGPEGTVPLQRDTVKTLASILAPTLCPSALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMGSERTSVALSQAFKTAQRLYSPTILLLRHFEVFRDSQSPEVSQNDQRGNTSEVASVIRKFTEPVGEHGDSNSLVKSNGESVEKTSEKISGHQVLLIAAADSSEGIPSTIRRNFSHEINMGTLTEEQRAEMLLHSLQNVYGLHSNTDLEGYVKEIVGQTSGFMPRDICALIADAGASLFPRSNAEVDKDEPEDADSSLSSKVTEDNNQPKVSALKPGKEDLVNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSAHPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRQRVLKALTRKFKLHEDVSLYDVAKKCPPNFTGADMYALCADAWFLAAKRRVLNADPESSNPDNEADSIVVEYDDFFQVLEELQPSLSTAELKKYELLRDQFEGTSK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03227 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 586 IPR027417 -
Tsu07g03227 924 MobiDBLite consensus disorder prediction 577 609 - -
Tsu07g03227 924 Gene3D - 329 537 IPR027417 -
Tsu07g03227 924 Gene3D - 636 913 IPR027417 -
Tsu07g03227 924 Pfam ATPase family associated with various cellular activities (AAA) 362 515 IPR003959 GO:0005524|GO:0016887
Tsu07g03227 924 Pfam ATPase family associated with various cellular activities (AAA) 678 810 IPR003959 GO:0005524|GO:0016887
Tsu07g03227 924 SMART AAA_5 674 814 IPR003593 -
Tsu07g03227 924 SMART AAA_5 358 519 IPR003593 -
Tsu07g03227 924 PANTHER PEROXISOME ASSEMBLY FACTOR 2 27 920 - -
Tsu07g03227 924 CDD AAA 662 810 - -
Tsu07g03227 924 Gene3D - 812 898 - -
Tsu07g03227 924 MobiDBLite consensus disorder prediction 578 594 - -
Tsu07g03227 924 PANTHER AAA-FAMILY ATPASE 27 920 - -
Tsu07g03227 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 918 IPR027417 -
Tsu07g03227 924 ProSitePatterns AAA-protein family signature. 781 799 IPR003960 GO:0005524|GO:0016887
Tsu07g03227 924 CDD AAA 352 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03227 Tsu-Chr7 38383713 38390430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03227 644 883 Calmodulin-binding Proteins AT3G56690 38.333 2.43e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03227 K13339 - gmx:100820183 1451.8