Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03222 aTGGACGACGACGACGACTCACAACAACCTTTCTCCCAATCCGAAACCTACCTAGCAGGCTTCGTAATAGCAAACATCGTCGGCCTAAGATACTACACCGGCACAATCAACGGTCGTGAAATCCTCGGCTTAGTTCGCGACCCACTCAACCAATACGACACAAACGCTATCAAAGTTCTCAACACTCAATCTCTCCAAGTCGGTTTCATCGAACGCTCCGTCGCCGCCGTTCTTTCGCCACTAATAGACGCTCATATCATTCAGATTGAAGGCATTGTTCGTGAAAACACTCGCTCTAAGTTCCGTATCCCTTGTCAGATTCACATTTTCTCTCATTTATCTTCTTTTGATGCTGTTCATGACGCTTTTATTGGTTCTACTGTTCATTTCATTTCGCATTCTGATCCTTCTTTTACTCTTTCTCATTCTGTTGCTGTTCAAGAAACTCGAGCTGATTTAGCTTCCGCCGGAACAAGCACCGCCGGTAACAATAAAGGTAAAATCAAAACCCTAgatcaaatattcaaactcGTTCGCGAAAATCTAGCTGATAAAAACCTAATTTCTGAACCTTTAAGTCCTCCTTCTAAGATAATTAAATCAGAATTGCTTCAGCATCAGAAGGAGGCGTTAGGATGGCTTTTTCATCGCGAAAATTCCGATGATTTACCGCCGTTTTGGGAAGAGAAAGAGGGGGGTTTTATTAATGTGTTAACTAATTATCAAACTAGTACCAAGCCGGAGTCTCTTCGTGGAGGGATATTTGCGGATGGGATGGGATTAGGGAAGACTTTGACATTGCTTTCGCTGATTGcttttgataaaatgaaatatGCGAAGAATAGGAAGAGGAGTAGGAGTAGTAGGGTGGAGATGAATAGTACATTGATTGTATGTCCTCCTTCTGTGATTTCGACGTGGGTAACTCAATTGGAAGAGCATACTAAATGTGGCGCGTTGAAGACTTATCTGTATTATGGTGATAGAAGGACTCAAGATGTTGAGGAATTGAGTAAATATGATATTGTGTTGACTACTTATAGTACTTTGGGAGCTGAATTGCGGTGTCCGGATACTCCTGTGAAGATGTTGGAGTGGAGGAGAATTGTTTTGGATGAAGCGCATACGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGGTTTGAATAGTAAGAGGAGATGGGCTGTTACTGGTACACCTATTCAGAATGGTTCTTATGATTTGTTTGCTCTTATGgcatttttgcattttgaacCTTTTTCTATTAAGAGTTATTGGCAAAACTTGGTTCAACGCCCGCTTACTCAAGGCAAACAGACAGGGCTTAGTCGATTGCAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGACACTGCATTGGTAGGGCTTCCGCCCAAGATTGTAGAGACCTGTTATGTTGAACTTTCATGTGAAGAGCGTAAACTGTATGAAGATGTTAAAGAGGAAATTAAATCCCTTATGATGCATTATAACAGCAATGACAGACTAGTGTATAGTTACTCCACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTACTCATATGTCGATGTGCCCTTTGGATTTCAAGTCCTGTCTATTTTCTTCAACTGAGATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAGTTAGGATGCTACAAGATGGTGAAGATTTTGATTGTCCAATTTGTTTATCTCCTCCAATGGATATTGTAATTACATGTTGTGCTCATATCTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAATTCCAGTTGTCCACTTTGTCGGCGCTCTCTCTCAGAATCTGACTTATTCTCAGCTCCCCCTGAATCTTCCAAGACTGATGAACTGTCCACACCAGAAGTAGGGTCGTCCACCAAAGTCTCTACTTTGATAAAGCTTCTAACAGAATCAAGGGATCAAAATCCAGCTACCAAATCAGTTGTATTTTCACAATTCTGTAAGATGCTGCTGTTGTTAGAGGAACCTTTAAAAGCAGCCGGGTTTAAAACATTGCGTCTTGATGGGACACAGAATGCTAAACAAAGGGCTCATGTTATTAACCaatttcaaaactcaaaaattgATGAGCCAATGATTCTGCTTGCAAGTCTCAAGTCTTCAAGTACAGGTATAAATCTTACGGCCGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAATCCAGCAGTTGAAGAACAAGCAATGGATCGTGTTCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATAGCTAAAAATAGCATTGAAGAGAAAATATTACAGTtgcaagagagaaagaaagagataaCAAGCCGAGGATCTGGGAGATCAAAGGATATTGCTGGTATGGGTATCAATGATCTCCGTTTTGTTTTAGGAGAGTAG 2439 0.3969 MDDDDDSQQPFSQSETYLAGFVIANIVGLRYYTGTINGREILGLVRDPLNQYDTNAIKVLNTQSLQVGFIERSVAAVLSPLIDAHIIQIEGIVRENTRSKFRIPCQIHIFSHLSSFDAVHDAFIGSTVHFISHSDPSFTLSHSVAVQETRADLASAGTSTAGNNKGKIKTLDQIFKLVRENLADKNLISEPLSPPSKIIKSELLQHQKEALGWLFHRENSDDLPPFWEEKEGGFINVLTNYQTSTKPESLRGGIFADGMGLGKTLTLLSLIAFDKMKYAKNRKRSRSSRVEMNSTLIVCPPSVISTWVTQLEEHTKCGALKTYLYYGDRRTQDVEELSKYDIVLTTYSTLGAELRCPDTPVKMLEWRRIVLDEAHTIKNVNAGQSQAVIGLNSKRRWAVTGTPIQNGSYDLFALMAFLHFEPFSIKSYWQNLVQRPLTQGKQTGLSRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSCEERKLYEDVKEEIKSLMMHYNSNDRLVYSYSTILSMILRLRQICTHMSMCPLDFKSCLFSSTEIEDVSKNPELLQTLVRMLQDGEDFDCPICLSPPMDIVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSESDLFSAPPESSKTDELSTPEVGSSTKVSTLIKLLTESRDQNPATKSVVFSQFCKMLLLLEEPLKAAGFKTLRLDGTQNAKQRAHVINQFQNSKIDEPMILLASLKSSSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILQLQERKKEITSRGSGRSKDIAGMGINDLRFVLGE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03222 812 MobiDBLite consensus disorder prediction 618 636 - -
Tsu07g03222 812 SMART ultradead3 199 428 IPR014001 -
Tsu07g03222 812 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 12 272 - -
Tsu07g03222 812 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 275 796 - -
Tsu07g03222 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 555 625 IPR013083 -
Tsu07g03222 812 MobiDBLite consensus disorder prediction 617 636 - -
Tsu07g03222 812 Gene3D - 469 802 IPR027417 -
Tsu07g03222 812 CDD SF2_C_SNF 639 768 - -
Tsu07g03222 812 Pfam HIRAN domain 21 112 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tsu07g03222 812 ProSitePatterns Zinc finger RING-type signature. 586 595 IPR017907 -
Tsu07g03222 812 Gene3D - 237 460 IPR038718 -
Tsu07g03222 812 Coils Coil 770 790 - -
Tsu07g03222 812 SUPERFAMILY RING/U-box 567 619 - -
Tsu07g03222 812 Pfam SNF2-related domain 206 531 IPR000330 GO:0005524|GO:0140658
Tsu07g03222 812 SMART HIRAN_2 19 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tsu07g03222 812 SMART ring_2 571 609 IPR001841 -
Tsu07g03222 812 Gene3D - 11 127 - -
Tsu07g03222 812 ProSiteProfiles Zinc finger RING-type profile. 571 610 IPR001841 -
Tsu07g03222 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 793 IPR027417 -
Tsu07g03222 812 Pfam Zinc finger, C3HC4 type (RING finger) 568 614 - -
Tsu07g03222 812 SMART helicmild6 672 757 IPR001650 -
Tsu07g03222 812 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 244 421 IPR014001 -
Tsu07g03222 812 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 807 IPR001650 -
Tsu07g03222 812 Pfam Helicase conserved C-terminal domain 641 757 IPR001650 -
Tsu07g03222 812 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 12 272 - -
Tsu07g03222 812 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 275 796 - -
Tsu07g03222 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03222 Tsu-Chr7 38328041 38332981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03222 1 806 RAD5 or RAD16-like Gene Family AT5G05130 57.425 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu07g03222 SNF2_N 1e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03222 K15711 - fve:101311093 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03222 07 38328041 38332981 Tsu07g03222 07 38328041 38332981 ECH