Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03221 ATGTCGAGCGAAAGAAAGAGTCGAGGTCGCCAAAAGCTTGAAATGAAAAGGATTACTAATGAGGCCAATATGCAAGTGACGTTCTCGAAACGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTAACACTCTTTGTGGTGCAGACGttgttataattatattttcacctAGTGAAAAAGCATTTTCCTTTGGTCAGCCTAACTCTGATACGGTGATAGATCGTTATCTCTCGCTAGTCCCATCCCAAAACAATGGTGACATGCGGTTCATTGAGGCCGAGCGTAGCGCCAACGTGTGTGAGCTAAATTCTCAGATCACTCAGTTAAACAATGCGATGGACATTGAGAGAAGTCGTAGTGTTGAGTTGAGTCATATGCAGaatatgaatgaaactcaatgTTGGCAGGATTGTCCCATTGATGGGATGAATTTTGATCAACTTGAATCACTGAAAAATGCATTAGCGAATCTAAAGAAGCGTATTGCTGAACATCCCGCGAGGCTTGTATTTCAGGGTGCTCCTAACATGCATGTCCATCAACCAAATCATCAACTGTTTCCGACACAACCTTTTTTGGACCCTATGTTGCCACCTTCTTTGTTTAATTACAACAATAtgggaggaggaggaggatatGGATCCTTCGAGAAAGGTTCATCCTCTAACATGCATGTCACCCATCAACCAAATCATCCACAAGGTCAAATTCTTCCCGCACAACCTTTTCAGAACCCTATGTTGCAACCTTATTTGATTGATTGCAACAATATGGGAGGAGGAGGATATGGACCCTTCGGAAATGGTTCATCTTCTAATATGGATGCCCATCATCAAACAAATCACCAACAAAGTCAAATATTTATGGCACAACCTTCTCAGAACCCTATGTTGCAACCTTATAATTTCTTTGATTACAACAATACTGGAGGAGGAGGACATGGAAACTTATGA 954 0.3962 MSSERKSRGRQKLEMKRITNEANMQVTFSKRRSGLFKKASELNTLCGADVVIIIFSPSEKAFSFGQPNSDTVIDRYLSLVPSQNNGDMRFIEAERSANVCELNSQITQLNNAMDIERSRSVELSHMQNMNETQCWQDCPIDGMNFDQLESLKNALANLKKRIAEHPARLVFQGAPNMHVHQPNHQLFPTQPFLDPMLPPSLFNYNNMGGGGGYGSFEKGSSSNMHVTHQPNHPQGQILPAQPFQNPMLQPYLIDCNNMGGGGYGPFGNGSSSNMDAHHQTNHQQSQIFMAQPSQNPMLQPYNFFDYNNTGGGGHGNL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03221 317 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Tsu07g03221 317 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 167 - -
Tsu07g03221 317 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu07g03221 317 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu07g03221 317 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu07g03221 317 Coils Coil 148 168 - -
Tsu07g03221 317 PANTHER MADS BOX PROTEIN 8 167 - -
Tsu07g03221 317 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu07g03221 317 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu07g03221 317 Gene3D - 87 170 - -
Tsu07g03221 317 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Tsu07g03221 317 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu07g03221 317 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03221 Tsu-Chr7 38318461 38319414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03221 5 179 Type I MADS-box Gene Family AT5G60440 45.251 7.00e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu07g03221 SRF-TF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03221 - - mtr:MTR_1g106070 233.802