Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03216 ATGAAGTCAGAAGAACTTGATCACTGGAGAAAGTACTTTCGTTCATCTAACTCTGACATCTTTAGCATCATTGATAATGCTATTGTTGTTGCTGCTAAGGATTGTCCTAAGGAGTTTAAGTCTAGGAGAGACAAAATTGCTGAGAGACTTTTCTCAGTTTTGCTGAATCGTTGTAAGGACTGTGAGAAGGTTGAAGTGCCTGTTTCTGATAATGAAAATGGTGAAGTTTGTAAGAGAGGTTCTGTTAAAAATGGTGCTAGTAAGGAGAGTAATGTTAATGGTGCTGGTAGGGAAGATAATGAAGTGATGAAGGTGAAACCTGCTAGCAATTATAGCTTTGATGAAGCTGAAGCTCTTACTGATGAACTTGAGGCAGAATCTCAAGCTATTGCTGAAGTTTTGAGGATCAAAGAGGTTCTCAGAAACAAGGAAGATGAGTCTGAATCAGTGCTGTTTGAGTCACTACGGAGGCTTGAACTGATGGGAATGTCTATGAATATTCTGGAgTCAACTGCAATCGGAAAGGCTGTCAATCCTCTCCGGAAGCATGGATCCAAGCAAGTTCGTGATCTCGCAAAGATTCTTATTGTTGCTTGGAAGGAAATGGTGGATACATTTTATGCCAAACGTGACCCAGCTGGAGGAGAAAACACTCCGGAATCGTTAAATCCATCTGGCGTTGTGAatgcagaagaagaagaagaaggaggacTTCCGTCAATTCCTTTGGACGAAGGGGCTTTCTTTGTGGCTCCATCCGGAATGGATTTCTCTGATCAGTTCTTCGATGGCATGGATGATGACGGAAATATTCAAAAGAGTGCACCACTCAACAAGAACCATGGCAATGGCAGAAGGCCAGCTATGGACACTGAAATTAAGGACAAAAGAAATGTGCCGGCATTTAATGGAACAGCCATCATTCCCAAGGACAATAAGAGTCAGCAATTGAAGAAGAATGAGGCCGAAGTGAGGCAAAATAAACTGAAACTGGTAGATGCTGATTCTGGCCCTCGCAGATACCTAACGTCAAACATTCAGCGAAATGGCAATGTGGAGCCAAAGATGCAGCAGAAACTGGAAAGCAGTGCTGTCCCAAAGAGGTCTTTAAATGCTCAGCAAGAtAATTCCAAGTGTTCTGATGATGCTGCTAAGCTCGAAGCCGCTAAGCGGAGACTTCAAGAGAATTATCAACTAGCCGAAAATGCTAAGAGGCAAAGGACAATTCAAGTGATGGATATCAATGAACTTCCAAAGCAAGGGACTGGCCACCGGAACACACATTTCAAACCGGGAAATCAAAATAGGCAGCGAGGTCTTCTGCGAAGATAG 1332 0.4197 MKSEELDHWRKYFRSSNSDIFSIIDNAIVVAAKDCPKEFKSRRDKIAERLFSVLLNRCKDCEKVEVPVSDNENGEVCKRGSVKNGASKESNVNGAGREDNEVMKVKPASNYSFDEAEALTDELEAESQAIAEVLRIKEVLRNKEDESESVLFESLRRLELMGMSMNILESTAIGKAVNPLRKHGSKQVRDLAKILIVAWKEMVDTFYAKRDPAGGENTPESLNPSGVVNAEEEEEGGLPSIPLDEGAFFVAPSGMDFSDQFFDGMDDDGNIQKSAPLNKNHGNGRRPAMDTEIKDKRNVPAFNGTAIIPKDNKSQQLKKNEAEVRQNKLKLVDADSGPRRYLTSNIQRNGNVEPKMQQKLESSAVPKRSLNAQQDNSKCSDDAAKLEAAKRRLQENYQLAENAKRQRTIQVMDINELPKQGTGHRNTHFKPGNQNRQRGLLRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03216 443 CDD TFIIS_I 130 204 - -
Tsu07g03216 443 MobiDBLite consensus disorder prediction 418 434 - -
Tsu07g03216 443 MobiDBLite consensus disorder prediction 349 382 - -
Tsu07g03216 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 438 - -
Tsu07g03216 443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 131 215 IPR035441 -
Tsu07g03216 443 MobiDBLite consensus disorder prediction 349 379 - -
Tsu07g03216 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 438 IPR044805 -
Tsu07g03216 443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 213 IPR035441 -
Tsu07g03216 443 Pfam TFIIS helical bundle-like domain 155 203 IPR017923 -
Tsu07g03216 443 Coils Coil 116 136 - -
Tsu07g03216 443 ProSiteProfiles TFIIS N-terminal domain profile. 131 206 IPR017923 -
Tsu07g03216 443 Coils Coil 376 406 - -
Tsu07g03216 443 SMART TFS2_5 130 205 IPR003617 GO:0005634
Tsu07g03216 443 MobiDBLite consensus disorder prediction 418 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03216 Tsu-Chr7 38277998 38281510 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Tsu07g03216 Med26 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03216 - - gmx:100775579 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03216 07 38277998 38281510 Tsu07g03216 07 38277998 38281510 ECH