Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03209 ATGAGAGAAGATGATTCAAATTGGTTTTCAAGATGGGAAGAACAACTCCCTTCACCTGATGAACTCATGCCTTTATCACAAACCCTAATCACACCTGATCTTGCCATAGCTTTTGACAtcagaaacaacaacaataacaataaccCACTTAACAACATtaatcactcaaacccacaacaacaacaacaacaacatcatcaaaatcatcaaaatcaacaacaacaacctcaacctTCTTCACTTCCTTCTTCAACCGATTTTGCCGATTCCGGCGAACTTGGTTCCGGTACAGCCGGTGAAGAACCAGCTAGAACACTCAAAAGACCTCGTCTTGTATGGACCCCACAACTCCACAAACGTTTCGTTGACGCTGTGGCACATCTTGGAATAAAAAACGCTGTTCCAAAGACTATAATGCAGCTTATGAGTGTTGATGGTTTAACAAGAGAAAACGTGGCGAGTCACTTGCAAAAATATCGTCTTTATTTGAAACGCATGCAGGGAATTTCTTCCGGTGGAGGTGGTGGTTCTGGTGGTGGTTCCGGTGGTGGTAATGATCCTGCTACTGACCATTTATTTGCTAGCTCACCTGTGCCGCCGCATTTTCTTCATCCGGTTGCGAGACCGAATTCGGATCATTTTATGCCTTTTGTTCCTGTTCCTGCTATTCATCATCAGCAACAGAtggctgctgctgctgctgctcaGTATCACCGGCCGGCTGGACATTTTGGGTCGCCGCCGAATGGACACTTTGAGAATCCTTTCTTGTCTAGACAGCAACAGCATCAACAGCAACATCAACATCAGCAGCAGCAGCTTCATAGGATTGGGACACAAATCCATCATAACCCTGTTGGTGGTTATGTGGAGGATATGGAATCAGCTAATGCATCAGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTGA 942 0.3928 MREDDSNWFSRWEEQLPSPDELMPLSQTLITPDLAIAFDIRNNNNNNNPLNNINHSNPQQQQQQHHQNHQNQQQQPQPSSLPSSTDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGGGGGSGGGSGGGNDPATDHLFASSPVPPHFLHPVARPNSDHFMPFVPVPAIHHQQQMAAAAAAQYHRPAGHFGSPPNGHFENPFLSRQQQHQQQHQHQQQQLHRIGTQIHHNPVGGYVEDMESANASGGRKVLTLFPTGDD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03209 313 MobiDBLite consensus disorder prediction 243 275 - -
Tsu07g03209 313 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 313 - -
Tsu07g03209 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 164 IPR017930 -
Tsu07g03209 313 SUPERFAMILY Homeodomain-like 105 165 IPR009057 -
Tsu07g03209 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 313 IPR044841 GO:0003700|GO:0006355
Tsu07g03209 313 MobiDBLite consensus disorder prediction 253 275 - -
Tsu07g03209 313 Gene3D - 105 167 - -
Tsu07g03209 313 Pfam Myb-like DNA-binding domain 112 160 IPR001005 -
Tsu07g03209 313 MobiDBLite consensus disorder prediction 40 91 - -
Tsu07g03209 313 MobiDBLite consensus disorder prediction 40 107 - -
Tsu07g03209 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Tsu07g03209 313 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03209 Tsu-Chr7 38176559 38178732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03209 1 313 G2-like Transcription Factor Family AT3G10760 59.885 3.91e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu07g03209 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03209 - - ccaj:109802866 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03209 07 38176559 38178732 Tsu07g03209 07 38176559 38178732 ECH