Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03173 atgatgatgatgtccAGTGCATGTTGTAGAACACTAATCCATAACCACTTTCTGTTATCCCGCTCCCCTCAACCAACTGCCCTTCAATTTCAACCACCATCTTCTCTACGGCTCCCTCCTATTCGCTCTCCTCCCTTCAACCAATTGCGCTTCCGTCATTCTCCTCTCTCTGCTTTCTCCCACGACGGTGGTTCCGGCGGTACTGGTGGAATTGGTGGTGATGGTGGATGGAATTCCGGTGACAATGAATCCGATAATGGATTGGGAAAATGGTCCTTCTTATCatgCATTATTGCAAACAAGTTAGAGCCTATGAATGCTTTACCATCACCTGTTTGGTTGGTGTTTGGATTTTATTGCATTGTTGTCCGTGGTCAACAACTTCTCCAAGATTGTCTTCAACAACTTCTCCAAGAATTTATTCAGCTCTACTGCTTGATAGCGATCCTTCCAGCCTTTGCCgaagtttttattaaattttacatcGGGTTCTTCGCTCTTTTCTGCATCCACGCAATAATAGCATTAGCTTATGCTTTAAGAATCAGGGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATGTAATGGTTATGGTTGATGacaacaagaagcaatttgttAAAACAAGAACCGGTTCATACAATCAAAGCCATATCGGTGAACTATCTCTTCATCCAGATGATTCTGAATGTTGTATCTGCCTATGTCCATATGTTGAAGGAACAGAACTGTATCGGCTTCCCTGTACCCACCATTTCCATTGTGCATGCATCAGCCGTTGGCTTCGGACAAAAGCAACTTGCCCGCTATGCAAATTTAATATAAAGACTTCCCGTCACTGA 870 0.408 MMMMSSACCRTLIHNHFLLSRSPQPTALQFQPPSSLRLPPIRSPPFNQLRFRHSPLSAFSHDGGSGGTGGIGGDGGWNSGDNESDNGLGKWSFLSCIIANKLEPMNALPSPVWLVFGFYCIVVRGQQLLQDCLQQLLQEFIQLYCLIAILPAFAEVFIKFYIGFFALFCIHAIIALAYALRIREGASEDDIRSLPMYRFSQSNVMVMVDDNKKQFVKTRTGSYNQSHIGELSLHPDDSECCICLCPYVEGTELYRLPCTHHFHCACISRWLRTKATCPLCKFNIKTSRH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03173 289 PANTHER TARGET OF ERK KINASE MPK-1 88 286 - -
Tsu07g03173 289 Pfam Ring finger domain 239 281 IPR001841 -
Tsu07g03173 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 288 IPR013083 -
Tsu07g03173 289 SUPERFAMILY RING/U-box 233 286 - -
Tsu07g03173 289 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Tsu07g03173 289 SMART ring_2 240 280 IPR001841 -
Tsu07g03173 289 PANTHER RING-FINGER UBIQUITIN LIGASE 88 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03173 Tsu-Chr7 37645039 37649505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03173 59 284 C3H Transcription Factor Family AT1G68070 37.069 1.25e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03173 - - gmx:100808066 264.618