Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03137 ATGGTGAGAAAGAGAAAGCTCGTGACTAAATCTTCTCAACCAGAGGAACCACCACTCAAGCAACATCAACCGGACCCCGAACCGGTTCCCGAACCTGAACCGGAACCATACATCCCTACCGATGAATACgaagaagttgaagaagaagttgaatACGAAGAAgtagaggaagaagaagaagtagaggaagaggaagaagaagaagaagaagaaactgaAGGTGGTGGAGAGTATCAAGACGAAGACGATGAACCGATTCAGAAACTTATTGAACCTTTTACAAAAGAACAGATCGCAAGTCTTCTTTGTGAAGCTGCATCGAAGCATCGTGATGTTGCTGATCGGATCAGGAAAATTGCTGACGGAGATGCTTCGCATCGGAAAATCTTTGTTCATGGTTTGGGTTGGGATACAACTTCAGCAACCCTAATTAATGCGTTTTCTCAGTACGGTGAAATTGAGGATTGTAAAGCGGTTACTGATAAGGTTTCTGGTAAATCTAAGGGTTATGGATTTATTCTGTTTAAGAGAAGAAGTGGTGCACGAAATGCGTTGAAGGAGCCGCAGAAGAAGATTGGGAATAGAATGACGGCGTGCCAGCTGGCGTCTATTGGTCCTGTGCAGCAAACTCCACAGCCGGCAGCACCACAGTTGGTTCCGCAAGGCTCGGAGTATACTCAGAGGAAGATTTATGTTAGTAATGTTGGTCCTGATTTGGATGCACAGAAGCTGTTTGGTTTTTTCTCGAGGTTTGGAGAGATTGAGGAAGGGCCGTTAGGGCTTGATAAGGTGACTGGAAAACCGAAagggttttgtttgtttgtttataagaGTGCTGAGAGTGCGAGAAGGGCATTGGAGGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGTCAGAGGGCAATTGATGGTCCTAAGGTTGTAAAgacacaacaacatcaacagcCGTTGCCGCAGCAACATGTGAATCCATTGAATCAATTGAATCCGTTGACTCAGAGGACACAATATCAGAGAAACGACAATGTGGGTTTCGTTGGTGGTAGTAGTGTTGCAGTTAGCCAACCAGGAGGGCACTTAATGGCACCGGGACCAGCAGCTGGGTACAATCAGGCGGCTGCTTCTGCTGTGCAGGGGCTGAACCCGGTGTTTACACCTGCTCTTGGACAGGCATTGACGGCACTGCTTGCGTCTCAGGGTGCTTCTTTGGGTCTGTCTAATTTGTTGGGGAGTCTTGGAACGAGTAGTGCTGTTAATCCAGGTATTCCTGCTGCGGGACATGGAGTTCAGAATGGATACAGTGCTCAGCCTACTATAAGTCCATCAGTTATGGGAGCATATGGGAATACGGTGCCACAGTCTGGGTTGCTGCAATACCCGAACCAGCAGATTGGACAAGGTGGTTCTGGAAGGGGCCAATATGGTGGTGCTGCACCTTACACGGGGCACTAG 1458 0.4396 MVRKRKLVTKSSQPEEPPLKQHQPDPEPVPEPEPEPYIPTDEYEEVEEEVEYEEVEEEEEVEEEEEEEEEETEGGGEYQDEDDEPIQKLIEPFTKEQIASLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPAAPQLVPQGSEYTQRKIYVSNVGPDLDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQHQQPLPQQHVNPLNQLNPLTQRTQYQRNDNVGFVGGSSVAVSQPGGHLMAPGPAAGYNQAAASAVQGLNPVFTPALGQALTALLASQGASLGLSNLLGSLGTSSAVNPGIPAAGHGVQNGYSAQPTISPSVMGAYGNTVPQSGLLQYPNQQIGQGGSGRGQYGGAAPYTGH 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03137 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Tsu07g03137 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 195 IPR000504 GO:0003723
Tsu07g03137 485 PANTHER - 31 485 - -
Tsu07g03137 485 MobiDBLite consensus disorder prediction 460 485 - -
Tsu07g03137 485 SUPERFAMILY RNA-binding domain, RBD 207 314 IPR035979 GO:0003676
Tsu07g03137 485 SUPERFAMILY RNA-binding domain, RBD 125 208 IPR035979 GO:0003676
Tsu07g03137 485 CDD RRM_RBM24_RBM38_like 127 202 - -
Tsu07g03137 485 MobiDBLite consensus disorder prediction 1 82 - -
Tsu07g03137 485 Coils Coil 43 75 - -
Tsu07g03137 485 Gene3D - 209 320 IPR012677 -
Tsu07g03137 485 CDD RRM_RBM24_RBM38_like 228 303 - -
Tsu07g03137 485 Gene3D - 40 208 IPR012677 -
Tsu07g03137 485 SMART rrm1_1 229 301 IPR000504 GO:0003723
Tsu07g03137 485 SMART rrm1_1 128 200 IPR000504 GO:0003723
Tsu07g03137 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 237 IPR000504 GO:0003723
Tsu07g03137 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 317 IPR000504 GO:0003723
Tsu07g03137 485 PANTHER GEO13361P1-RELATED 31 485 - -
Tsu07g03137 485 MobiDBLite consensus disorder prediction 37 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03137 Tsu-Chr7 37363837 37368510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03137 227 319 C2H2 Transcription Factor Family AT2G19380 36.170 4.09e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03137 K12741 - gmx:100784200 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03137 07 37363837 37368510 Tsu07g03137 07 37363837 37368510 ECH