Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03135 ATGTTTCAATGTATTATCAGTTATATCAGTTTCGAGTCAGGTCTCAGCAGTAGGATAAGGTGGAGGCTAAGGGCGGTTCTTCCTATCGTTGCTCCTTTCCACCACACCCCTCCCTATCTATCTCTACCGTGGAACATTATGGGTTCTCAACCAGGTGTTCGTGAGTGGTCTGGAATCAATACATTTGCTCCTGCTACACAGACCAAATTGCTTGAACTTTTGGGAAAACTTAAACAAGagGATGTGAACTCCTTAACCATACTTGTGATGGGTAAAGGTGGTGTTGGAAAGTCTTCAACTGTCAACTCTATCATTGGGGAAAGAGTTGTTTCAATTAGTCCCTTTCAGTCGGAAGGACCAAGACCAGTTATGGTGTCGCGATCAAGGGCAGGTTTTACATTGAACATTATCGATACTCCTGGTCTTATTGAAGGGGGGTACATCAATGATATGGCGCTTGATATAATAAAACGTTTCCTTCTAGACAAGACCATAGATGTTCTTCTTTACGTGGATCGCTTAGATGCTTATCGAGTAGACAACTTGGACAAGTTGGTTGCGAAAGCTATAACTGACAGTTTTGGCAAAGGAATATGGAACAAGGCTATAGTAGCACTCACACATGCCCAATTCTCTCCACCAGATGCATTGCCTTATGATGAATTCTTCTCAAAAAGATCTGAGGCTCTCTTGCAAGTTATCAAATCAGGTGCTTCCTTAAAGAAGGATGCCGCTCAGGCTGCTGCCATTCCGGTTGTTTTGATCGAAAACAGTGGGAGATGCAACAAAAATGACAGCGATGAAAAGGTTCTTCCAAATGGGATTGCTTGGATTCCTCATCTAGTCCAAACAATCACAGAAGTCGCATTGAACAAAAATGAGTCTATTTTGGTTGACAAGAAGTTGATTGAAGGACCGAATCCAAATCAGAGAGGAAAACTATGGATTCCTCTCATATTTGCAGCACAATTCTTCTTTATCATGAAGCCTATAGAATCGATGATCAAGAATGACATTGCTAATGAAGAAAGGCCCTCATGGGAGACGCGTGGGGAGCCGCGTGGGGAGCCGCGTGATGTATATGGTGGTCGGAAAGAGAAGCCTTTTCGCagTGTCACTATGTATCATGCAAAGAAGTTTCCGGAGGCAACGATGATGCCTCATAAATCTCAAGGTGTAGGAGCTGAACAGCTTACAAATGTTGGGGTTTTGAGTGGATCTGCTGTGAAAAATGTTGCACCTGCGCCTGCATCTtccggtggtggtggtggtgggaaACAGCGGTTGCGTTGGACGTCCGATCTTCATGATCGTTTTGTGGATGCTATTACACAGCTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTGCTGAGAGTGATGGGCGTACCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGCTGATGGTAAAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGTATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAATGACGCACTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAACAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGGAGTACCTTGGCAGCCTCAGAAACACTTCCATTGCCCAATGATAAGCACAACCATACCCAGTCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGGACTTTTTCTCCACTTAAAAAACAGAGAATTGATGAAGGTCCTAATGATGGCTTCACTGCATCCCAAGTTACAAGAAACAGTGCAGAGAAGAATGATTGTAATGTTGGTCGTTTAGATCCAAACTTGTATGAAGATGATGCTGGCTTTGGATTTGATTTAGAGACAGAAAACGATGACAACAATGAGAGTGAGTAG 1977 0.4279 MFQCIISYISFESGLSSRIRWRLRAVLPIVAPFHHTPPYLSLPWNIMGSQPGVREWSGINTFAPATQTKLLELLGKLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALDIIKRFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDALPYDEFFSKRSEALLQVIKSGASLKKDAAQAAAIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKNESILVDKKLIEGPNPNQRGKLWIPLIFAAQFFFIMKPIESMIKNDIANEERPSWETRGEPRGEPRDVYGGRKEKPFRSVTMYHAKKFPEATMMPHKSQGVGAEQLTNVGVLSGSAVKNVAPAPASSGGGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLPNDKHNHTQSEPSGSSDALAGTFSPLKKQRIDEGPNDGFTASQVTRNSAEKNDCNVGRLDPNLYEDDAGFGFDLETENDDNNESE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03135 658 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 483 IPR017930 -
Tsu07g03135 658 Gene3D - 425 484 - -
Tsu07g03135 658 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 52 347 IPR045058 -
Tsu07g03135 658 SUPERFAMILY Homeodomain-like 426 480 IPR009057 -
Tsu07g03135 658 TIGRFAM 3a0901s02IAP34: GTP-binding protein 47 351 IPR005688 GO:0006886|GO:0009707|GO:0015450
Tsu07g03135 658 MobiDBLite consensus disorder prediction 486 503 - -
Tsu07g03135 658 MobiDBLite consensus disorder prediction 643 658 - -
Tsu07g03135 658 Gene3D - 49 315 IPR027417 -
Tsu07g03135 658 PANTHER TRANSLOCASE OF CHLOROPLAST 52 347 - -
Tsu07g03135 658 ProSiteProfiles AIG1-type G domain profile. 82 306 IPR006703 GO:0005525
Tsu07g03135 658 MobiDBLite consensus disorder prediction 485 515 - -
Tsu07g03135 658 Pfam Myb-like DNA-binding domain 429 479 IPR001005 -
Tsu07g03135 658 MobiDBLite consensus disorder prediction 343 365 - -
Tsu07g03135 658 Pfam AIG1 family 85 274 IPR006703 GO:0005525
Tsu07g03135 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 304 IPR027417 -
Tsu07g03135 658 Coils Coil 517 537 - -
Tsu07g03135 658 Pfam MYB-CC type transfactor, LHEQLE motif 514 560 IPR025756 -
Tsu07g03135 658 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 426 481 IPR006447 GO:0003677
Tsu07g03135 658 MobiDBLite consensus disorder prediction 569 595 - -
Tsu07g03135 658 MobiDBLite consensus disorder prediction 609 625 - -
Tsu07g03135 658 CDD Toc34_like 54 299 - -
Tsu07g03135 658 MobiDBLite consensus disorder prediction 569 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03135 Tsu-Chr7 37321290 37334850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03135 402 576 G2-like Transcription Factor Family AT3G13040 48.876 3.81e-48 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu07g03135 AIG1 4.2e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03135 - - mtr:MTR_3g090160 522.316