Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03097 ATGTCATTCTTGAAACCCGAGAATGCCCTCAAAAGGGCAGAAGATTTAATCAGTATTGGGCAGAAACAGGACGCTCTTAATACTTTGCACGGCCTTATTACTTCGAAAAGACACCGAACATGGCAGAATACACTTGAACTGATTATGTTTAAGTATGTAGAGCTATGCGTAGAGATGCGGAAAGGACAGTTTGCGAAGGATGGACTGATCCAGTATCGTTCGATATGTCAGAATGTGAATGTTAGTTCGCTGGAGGAAGTGATTAGGCATTTTATCAACCTATCAACAAAGAAAGTTACACAAGCTGGTAGCGATGCACATACATTAGAACAAGGTATCGATGTAGATGACCTAGAGGCATGTAAAAGGCCAGAGGACTTGATGATGAGTTATGTCAGTGGAGAGAAAGGAAAGGATAGATCTGAGCGGGAGCTTGTTACCCCATGGTTTAAATTCCTTTGGGAAAGTTACAAGATAGTGCTTGATATATCGCGGAACAACTCAAAATTCGAAGCCTTATACGCTACGACTGCTCATCGAGCTTTCGAGTTTTGTAAGCAGTATAAAAGAAAAACTGAATTTAGAAGACTCTGTGAAATCATAAGAAACCATTTGGCTAATCTTATCAAATATTGGGACCAACCAAACCGACCTGATCTTTCTTCTCCTGAAAGCTTGCAATTGAATGTTAGATTTGACCAGCTTGAAATTGCTGCTGTACTTGAACTCTGGCAGGAAGCCTTTAGATCCGTTGAAGATATACATGGCCTAATGTGCATGGTCAGAAAAACACCGAAACCATCCATGATGAGTTCTTACTACATTAAATTGACCGAAATATTTTGGAAATCTTCAAGTCATTTATATCATGCATATGCATTGTCCAAGCTCTTTTTGTTACAAAAGAGCTTCCACCAAACTCCGAGTCAGAAGGATATGGAGTTAATAGCTTCAGCTGTTGTTCTATCTGCACTTTCAGCGCCTCCTTATGAAAGCAATTTACAACTAAAGCATGAAAAGgagagaaatttgaagatgGCTAACCTCATATGCTTTAATCTTGAAGATAAGACTGATAGCAAAACAACGCTCTCAAGGTCTTCACTTCTTGCTGAACTGGCATCGGAGGGTGTGATGTCCTATGCTGCACAAGAAGTGAAGGACATTTACTATCTTTTGGAACAGACATTTCTTCCCTCGGATCTTGCACTTAAAGTACCATCCTTgctaaataaaatttcaaaagtaGGGGGTATCGCTTCATCGAATTTAAACGTTCAATTATCAACATATGTCCCAGCACTTAAAGAGTTAGCTACCCTGAGGTTGCTACAACAGGTGTCTAATGTGTACCAGATGATGAAGTTTGAGAACTTAGCTGCGATGGTAcctttctttgatttttctgATGTGGAAAAGATTTCTGTAGATGCTGTTAAGCAGAAATTTCTATCAATGAAATTTGACCACAGGAAAAAAGTTGTAATTTTCGGCAAGagtcttgAGTCTGATGACTTAGGGGGTCACTTTGCGAATTTTGCTGAACAATTGAATGAGGCAAGACAAATGATATGTCCTCCTGAAAGGAAACAATCAAAACTTGAACTATTGCTCCCACGTTTGTTAGAGGTTGTTGACGAAGAACACAAGAGGCTCCTTGCTCGAAAATTAATTATTGAGAAGAGGAAAGAAGAACAAGAGCAGCAAGAACTTCTTGAAATGGAACAAGAGAAGGAATCGATTGCTGAAGAGGCAGCAGAACAAATGCAGCCTGCAACTAAGCAGAATAACAATCAAAAGATCCATCAAGAAATAGCGGAAAGAGAACGTGAAGAAGATAAAGAGCGTAGAAATGCGGAGTTGGTTTTGACTAAACAACTCCGGAAGAGAcaagaaatgaagaagaaatgggAGAAATTAGCTACAACCATGGACTATTTGGAAAGAGCAAAGAGAGAAGAGGCTGCTCCGCTTATCGAAGCTGCATATCAACAACGTCTAGTGGAAGATGAGATTCTTCACGAGCATATGCAACAAGTATATTTACTTGAGATATACCAAGAGAAAGTTGTCAATCGTCGGCAAATAGAATTTAACCGATTGAAGAGAGAAAGGGAACAAGAGAGGGAGAAAGTGAGAACACAGAGggagaaaatgagaaaattgaAGTATTATCTTCAGTTGGAAGAAGAGAGGCGACAAAAATTGCATGCGGAGGAAAAAGCTCGGAAGCTTGAAGAGGCTgagagaaaaaagaaggaagagaCTGAACGCTTAGCAAAGCTGGATGAGATTTATGAAAAGCGGAGgcaaagagaaagagaaattgaagaaAAGGCGGAGAAGCAAAAGAGGGAAGCATTGTTGGGCAGACCTATTGAACCAGCTGCGAGGCCTTATGAGCCTCCTGCCCGTCGTCCATCGGAGTCTGGTACTGCTGCTCCTGCAACTTCCGCATCCCCGGCTTCAGGGAAATATGTCCCCAGGTTCCGACGAGGAGGAGCTTAA 2508 0.3888 MSFLKPENALKRAEDLISIGQKQDALNTLHGLITSKRHRTWQNTLELIMFKYVELCVEMRKGQFAKDGLIQYRSICQNVNVSSLEEVIRHFINLSTKKVTQAGSDAHTLEQGIDVDDLEACKRPEDLMMSYVSGEKGKDRSERELVTPWFKFLWESYKIVLDISRNNSKFEALYATTAHRAFEFCKQYKRKTEFRRLCEIIRNHLANLIKYWDQPNRPDLSSPESLQLNVRFDQLEIAAVLELWQEAFRSVEDIHGLMCMVRKTPKPSMMSSYYIKLTEIFWKSSSHLYHAYALSKLFLLQKSFHQTPSQKDMELIASAVVLSALSAPPYESNLQLKHEKERNLKMANLICFNLEDKTDSKTTLSRSSLLAELASEGVMSYAAQEVKDIYYLLEQTFLPSDLALKVPSLLNKISKVGGIASSNLNVQLSTYVPALKELATLRLLQQVSNVYQMMKFENLAAMVPFFDFSDVEKISVDAVKQKFLSMKFDHRKKVVIFGKSLESDDLGGHFANFAEQLNEARQMICPPERKQSKLELLLPRLLEVVDEEHKRLLARKLIIEKRKEEQEQQELLEMEQEKESIAEEAAEQMQPATKQNNNQKIHQEIAEREREEDKERRNAELVLTKQLRKRQEMKKKWEKLATTMDYLERAKREEAAPLIEAAYQQRLVEDEILHEHMQQVYLLEIYQEKVVNRRQIEFNRLKREREQEREKVRTQREKMRKLKYYLQLEEERRQKLHAEEKARKLEEAERKKKEETERLAKLDEIYEKRRQREREIEEKAEKQKREALLGRPIEPAARPYEPPARRPSESGTAAPATSASPASGKYVPRFRRGGA 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03097 835 MobiDBLite consensus disorder prediction 588 617 - -
Tsu07g03097 835 Coils Coil 691 722 - -
Tsu07g03097 835 Gene3D - 341 482 - -
Tsu07g03097 835 Gene3D - 266 340 - -
Tsu07g03097 835 Coils Coil 594 618 - -
Tsu07g03097 835 Coils Coil 549 584 - -
Tsu07g03097 835 Pfam PCI domain 366 499 IPR000717 -
Tsu07g03097 835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 2 614 - -
Tsu07g03097 835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 620 680 - -
Tsu07g03097 835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 685 834 - -
Tsu07g03097 835 Gene3D UVR domain 216 265 - -
Tsu07g03097 835 ProSiteProfiles PCI domain profile. 313 502 IPR000717 -
Tsu07g03097 835 SMART PINT_4 430 520 IPR000717 -
Tsu07g03097 835 MobiDBLite consensus disorder prediction 601 617 - -
Tsu07g03097 835 Coils Coil 728 786 - -
Tsu07g03097 835 MobiDBLite consensus disorder prediction 770 791 - -
Tsu07g03097 835 MobiDBLite consensus disorder prediction 770 835 - -
Tsu07g03097 835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 2 614 IPR027512 GO:0005852
Tsu07g03097 835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 620 680 IPR027512 GO:0005852
Tsu07g03097 835 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 685 834 IPR027512 GO:0005852
Tsu07g03097 835 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 430 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03097 Tsu-Chr7 36892516 36896547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03097 2 832 Eukaryotic Initiation Factors Gene Family AT4G11420 56.402 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03097 K03254 - gmx:100803796 974.926