Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03093 ATGGGAAGACCTCCTTGTTGTGACAAAGTTGGTGTCAAGAAAGGTCCTTGGACTCCGGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAGCATGGTCCGGGAAATTGGAGATCAGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGAGGAAACTTTACTCCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAgataatgatataaaaaattattggaaCACACATCTAAAGAAAAAGCTCAACAAATTTCAAGCAGCTTTAGATCAACCATCAAACTCAACTACAACTTATTTATCCAAGAGTTTTAGTGATAGAAGTTTAGATATAAGCAATAATCATGCTTCATCTCTTAAGCttaatactactactactactactcaatcttcttcttcaacataTGCTTCAAGCACTGAAAATATTTCAAGACTTTTAGAAGGTTGGATGAGAACTTCTCCAAATTCACAAATCAAAGGAAATTACCAATATGGTCATCAAGATTTTCAAAGCATTAATGATGATATTatggatgatgataataatgattttgaaaataatggtAAGTTATTAGTGAAATCTTCTTCAGTTCCAGCTGATTTAAACCTTGaaattcatcatcataatcatcatcaaaaaATTACCAAAGGTGATTTATTACAAGAAGGTGGAGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTCGAAAATCTTAACAATGGTGTTACTTGGGATAAGTCAACTTGTGATTCTATGCCTCATGAAAAGTgttctacttcttcttcttctgatcaTCACAAGAATCATATTAAGAATTTATGTGGAGCTCCTCCTCCATTGTCATTTCTTGAGAAATGGTTATTGGATGAAAATGTTGGACATGTAGAGGAAATGATGGAATTATCTCCAATGTTCTAA 1029 0.3032 MGRPPCCDKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAALDQPSNSTTTYLSKSFSDRSLDISNNHASSLKLNTTTTTTQSSSSTYASSTENISRLLEGWMRTSPNSQIKGNYQYGHQDFQSINDDIMDDDNNDFENNGKLLVKSSSVPADLNLEIHHHNHHQKITKGDLLQEGGGVSHDQEFDSILSFENLNNGVTWDKSTCDSMPHEKCSTSSSSDHHKNHIKNLCGAPPPLSFLEKWLLDENVGHVEEMMELSPMF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03093 342 CDD SANT 69 112 IPR001005 -
Tsu07g03093 342 CDD SANT 16 61 IPR001005 -
Tsu07g03093 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu07g03093 342 Gene3D - 69 138 - -
Tsu07g03093 342 SMART sant 66 114 IPR001005 -
Tsu07g03093 342 SMART sant 13 63 IPR001005 -
Tsu07g03093 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g03093 342 PANTHER TRANSCRIPTION FACTOR MYB60 1 334 - -
Tsu07g03093 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 334 - -
Tsu07g03093 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu07g03093 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g03093 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu07g03093 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu07g03093 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g03093 342 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03093 Tsu-Chr7 36856634 36858663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03093 1 119 MYB Transcription Factor Family AT5G62470 89.916 5.30e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g03093 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03093 K09422 - gmx:100802204 447.203