Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03092 ATGGCTGATGGTGAATCAAACAAGAACATTGAGATATGGAAGATCAAAAACTTGATCAAAGAACTGGAAGCTGCAAGAGGTAATGGTACTAGCATGATTTCGCTGATAATACCTCCGCGCGATCAAATATCTCGTGTCAATAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAATATCAAAAGTAGGGTAAATCGACAATCTGTGCTTGGAGCCATTACTTCTGCTCAACAGAAGTTGAAATTATATAACAAGGTTCCTACAAATGGATTGGTCGTTTATACTGGTACTGTTATCACTGATGAAGgcaaggaaaagaaaaagacataTGATTTTGAACCTTTCAAACCAATCAATGCATCACTTTATCTCTGTGATAACAAATTTCATACAGAAGCTTTAAATGAACTTCTAGGATCTGATGACTTGTTTGGTTTCATTGTTATGGATGGAAATGGAACCCTTTTTGGGACTTTAAGTGGAAATACTCGTGAGGTACTTCATAAATTTGACGTCGATCTACCAAAGAAGCACGGTAGAGGAGGACAGTCAGCTTTGCGTTTCGCTCGTCTTCGGATGGAAAAACGGCACAATTACGTTAGGAAGGCTTCAGAACTTGCTACTAAGTATTACATCAACCCTGCTACTAGTCAACCTAATGTTGTTGGACTCATACTTGCTGGTTCGGCTGACTTCAAGACTGAGCTGAGCCAGTCAGATATGTTCGATCCTcgtttgaaagaaaaaatattgaaagtgGTTGATGTTTCCTATGGTGGGGAAAGTGGCTTTAACCAAGCTATTGACTTATCAGCAGAGCTTCTATCTGATGTGAAGTTCATGCAAGAGAAACGCTTAATAGGAAAATATTTCGAAGAGATAAGCCAAGAAACTGGGAAATATGTTTACGGAGTTGATGACACATTGAAGTCCCTAGAGATGGGTGCTGTTGAAACACTCATTGTATGGGAGAATTTGGATATTAATAGGTGTGTCCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTGAAGAAGGAACAAGAAGCCGATCAAAGCAACTTCCGCGATGCAGCTACCTCTGCAGACTTGGAGGTTCAAGAGAAGATGTCATTACTCGAGTGGTTTGCAAATGACTACAAAAAGTTTGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCGCAGTTTTGCAAGGGGTTTGGTGGTATTGGAGGTATGCTTCGCTACCAACTTGATATCAGATCATTTGATGAGTtatctgatgatgatgatacaGTGTATGAGGATTCCAATTAA 1314 0.3805 MADGESNKNIEIWKIKNLIKELEAARGNGTSMISLIIPPRDQISRVNKMLGDEFGTASNIKSRVNRQSVLGAITSAQQKLKLYNKVPTNGLVVYTGTVITDEGKEKKKTYDFEPFKPINASLYLCDNKFHTEALNELLGSDDLFGFIVMDGNGTLFGTLSGNTREVLHKFDVDLPKKHGRGGQSALRFARLRMEKRHNYVRKASELATKYYINPATSQPNVVGLILAGSADFKTELSQSDMFDPRLKEKILKVVDVSYGGESGFNQAIDLSAELLSDVKFMQEKRLIGKYFEEISQETGKYVYGVDDTLKSLEMGAVETLIVWENLDINRCVLKNATTGEIVIKHLKKEQEADQSNFRDAATSADLEVQEKMSLLEWFANDYKKFGCSLEFVTNKSQEGSQFCKGFGGIGGMLRYQLDIRSFDELSDDDDTVYEDSN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03092 437 Gene3D eRF1 domain 2 135 276 IPR042226 -
Tsu07g03092 437 Gene3D eRF1 domain 1 1 134 IPR024049 -
Tsu07g03092 437 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 437 - -
Tsu07g03092 437 SUPERFAMILY Translational machinery components 141 275 - -
Tsu07g03092 437 SMART eRF1_1_2 3 139 IPR005140 -
Tsu07g03092 437 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 11 416 IPR004403 GO:0003747|GO:0006415
Tsu07g03092 437 Gene3D - 278 437 IPR029064 -
Tsu07g03092 437 SUPERFAMILY L30e-like 277 419 IPR029064 -
Tsu07g03092 437 Pfam eRF1 domain 3 280 417 IPR005142 -
Tsu07g03092 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 437 IPR004403 GO:0003747|GO:0006415
Tsu07g03092 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 138 IPR024049 -
Tsu07g03092 437 Pfam eRF1 domain 2 144 277 IPR005141 -
Tsu07g03092 437 Pfam eRF1 domain 1 21 137 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03092 Tsu-Chr7 36805945 36807258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03092 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 84.439 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03092 K03265 - egr:104419069 778.089