Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03068 ATGGTGGCAATGAGAATAAAAGATGATTTGCTGCGTGGAAGCGTCGACTTCGAGACAACCGAGGCTCTGAAGACGTTTAAAAGTTTCAAGGAGATGGGAATCAAAGACAATTTACTCCGTGGAATCTACCAATACGGTTTCGACAAACCATCTGCGATTCAACAGCGTGCTATTGCACCTATCATTCAAGGTCGCAATGTCATTGCTCAAGCTCAATCTGGAACTGGCAAGACTTCCATGATTGCTCTAACTGTTTGCCATCTTGTCGATACTTCCATCAGAGAGGTGCAGGCTTTGATTGTTTCGCCTACAAGGGAACTGGCTTCGCAAACTGAAAAAGTTATATCTGCTATTGGAGATTACACAAATATACGAGCCCATGCTTGTGTCGGAGGCAAAAGTGTCGGAGAAGACATAAGGAAACTTGAACACGGAGTTTATGTAGTGTCTGGAACACCAGGTCGAGTTCTTGACATGATCAAAAGGAAAACATTGTCCACAAGAGCTATCAAGTTGCTTGTTCTTGATGAATCTGATGAAATGCTGAGCAGAGGTTTTAAAGATCAAATCTATGATGTGTACAGATATCTCCCACCGGATCTTCAGGTTGTCCTCGTTTCCGCTACGCTGTCTCAAGATATTTTGGAGATGACAAATAAGTTCATGAAAGATCCTGTCAAGATCCTTGTAAAACGCGATGAATTGAAGTTGGAGGGCATCAAGCAATTTTTCGTTGACGTTGAAAGGGAGGAATGGAAGTTTGACACACTGTGTGATCTTTATGATCTTCTTACCATTACTCAAGCTGTTATATTCTGTAACACGAAGCGAAAGGTGGACTGGTTAACTGAAAAATTGCGAAACAATAATTTCACCGTCTCTTCAATGCATGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCGGGAACAACCCGAGTATTGATAACAACAGATGTTTGGGCTCGTGGTCTTGATGTGCAGCAGGTTTCCCTAGTTATTAATTATGACCTTCCGAATAATCGAGAGCTGTATGTTCATAGGATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGTGTTGCAATAAATTTTGTGAAAGACAATGATATCAAGATTCTACGAGACATAGAGCAATATTACGGCACTCAAATTGACGATCTGCCATCAAATGTTGCTGATCTTATATAA 1203 0.4156 MVAMRIKDDLLRGSVDFETTEALKTFKSFKEMGIKDNLLRGIYQYGFDKPSAIQQRAIAPIIQGRNVIAQAQSGTGKTSMIALTVCHLVDTSIREVQALIVSPTRELASQTEKVISAIGDYTNIRAHACVGGKSVGEDIRKLEHGVYVVSGTPGRVLDMIKRKTLSTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLVSATLSQDILEMTNKFMKDPVKILVKRDELKLEGIKQFFVDVEREEWKFDTLCDLYDLLTITQAVIFCNTKRKVDWLTEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYVHRIGRSGRFGRKGVAINFVKDNDIKILRDIEQYYGTQIDDLPSNVADLI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03068 400 Pfam DEAD/DEAH box helicase 52 214 IPR011545 GO:0003676|GO:0005524
Tsu07g03068 400 SMART ultradead3 46 243 IPR014001 -
Tsu07g03068 400 Gene3D - 232 400 IPR027417 -
Tsu07g03068 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 105 IPR027417 -
Tsu07g03068 400 Gene3D - 12 231 IPR027417 -
Tsu07g03068 400 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 228 IPR014001 -
Tsu07g03068 400 PANTHER BNAC03G41130D PROTEIN 16 393 - -
Tsu07g03068 400 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 400 IPR001650 -
Tsu07g03068 400 Pfam Helicase conserved C-terminal domain 255 361 IPR001650 -
Tsu07g03068 400 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 16 393 - -
Tsu07g03068 400 CDD SF2_C_DEAD 240 370 - -
Tsu07g03068 400 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Tsu07g03068 400 SMART helicmild6 280 361 IPR001650 -
Tsu07g03068 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03068 Tsu-Chr7 36540406 36541608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03068 17 400 Eukaryotic Initiation Factors Gene Family AT3G19760 82.292 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03068 K13025 - gmx:100800020 676.011