Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03067 ATGGTTTTCTGCGATCATTGTGTCACTGACGTTATCGCAGAGCGATACGATGATTGTTACTTAACTTGTACTTCTTGTGGGAAGGTGTTGGAAGATCAGTTTTATTCTGAGGAgcctgttttttttaaaaactcgGCGGGACAGAGCAAATTATCGGGAACTTATGTCCAATCGGTTCAAAGAGAGATATCTGAATCACGTCGAAGGACATTATATAGAGCTTCTAAAGAAATGGAATATTTAAGTCTCAACCTTGGAGTAACTGACGATAATATGATCAGCCAAGCTTTGGCCTTCTATGAAATAGCACTTGCAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACAGGCTGCATGTCTCTATATTGCATTCCGGCAAAATAAAAAGCCATACTTTCTTATTGAATTTTCAAATAGTTTAAGGATAAATGTCTACAAGCTTGGAGAAGTTTTTTTGCAGCTTTGTGAAGTTTTAAGGCTTAATAATCACCCACTTGTTAAAAAGCCTATTGATCCTTGTCTATATCTTTATAAATATACTAGTAATTTGTTAGGCCACAGAAATGGGGTTGTCTCTGAAACTGCACTGAGCATTATTGCAGATATGAACCGTAACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGCTGCTGCATTATTCATCTCTAGTAATGGACATGGTCATAACATCTCTAAGGCAGATATTCTAAGACTCTTCCATGTATGCGAGGCAACATTGACCAAGCGATTGATAGAATTTGAGAATACAGACTCTTCTAGCTTGACAGTTGAGGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAAATCCAGTTGTGTTGCCAAACAGTGAATTTAAAGGATCTACTTCAGACGATCTAGTGTGTGAGCACAAAGATAGCAATGTGCCCTGTTTTGCACTTGGACTATGTGAAGCTTGTTACAAGGATTTTGATAAGCTCTCGGGAGGATTTGGTGGTGGTTTGGACCCTCCTGCGTTCCAGCGTGCTGAAAGGGAGAGAGTAAAGAAAACAGTTTCTAAGGAAAGGGCAGATGTGGTGAAGGCATCAAATAGTGCATGCAAGGGACAAAAAGAAGATTTGCCTACCTCTGTGCTAGAAAGGGATCGCACTAGTTCGGAAGAAGACACCAGTGCAGAAGCTGAAGATGAATCAGGAAATTTCTCTGATATCGATGACCAAGAGGTTGACGGGTACCTTTTCAATGAGGAAGAGAAACATTACAAGAAGATATATTGGGAAAATGAGAACCGCGAGTATCTTGCGGAGCAAGCAGTAAAGGAAGCAGCTGCAGCAGCTGCGAAGAAAATTTATGAAGCAAATTTGAAAAACTGTCCGGTAGAATCAAGAGAACTTTATGAATCTACTACTGCAGCTTTGGCAAAATCCAAAAAGAGACGAGCTCAGCAGGCAAAAAATTCAGGGCCTGCTAAATCTGCTGCAGAAGCCGCTTGTCAAATGGTGAAAAAAAAGAAGCTCAGTAGCAAAGTCAATTTTGAGTGCCTGGCAAAATTATTTGAAGATGAACCAGCAGATGCGCGTACTCCCAAGAAAGTACGATTTGATCTAGCCTCTGATAATCATGACAAATTTCAGTCTAAGGTTCAGGACCCAAAAGATGATGAGCTTGGGTCTGAGGATAATTTTGAGGATGGTGACAAGGATTGGTGTAATAATGAAAATATGGATGCGGCATATTTCCCTGAGGATGATGGTTATAATTATGATGAGGATTATTACTGA 1773 0.3965 MVFCDHCVTDVIAERYDDCYLTCTSCGKVLEDQFYSEEPVFFKNSAGQSKLSGTYVQSVQREISESRRRTLYRASKEMEYLSLNLGVTDDNMISQALAFYEIALAKNFTRGRKSEQVQAACLYIAFRQNKKPYFLIEFSNSLRINVYKLGEVFLQLCEVLRLNNHPLVKKPIDPCLYLYKYTSNLLGHRNGVVSETALSIIADMNRNWMQTGRKPSGLFAAALFISSNGHGHNISKADILRLFHVCEATLTKRLIEFENTDSSSLTVEELNAMAKEHEKNPVVLPNSEFKGSTSDDLVCEHKDSNVPCFALGLCEACYKDFDKLSGGFGGGLDPPAFQRAERERVKKTVSKERADVVKASNSACKGQKEDLPTSVLERDRTSSEEDTSAEAEDESGNFSDIDDQEVDGYLFNEEEKHYKKIYWENENREYLAEQAVKEAAAAAAKKIYEANLKNCPVESRELYESTTAALAKSKKRRAQQAKNSGPAKSAAEAACQMVKKKKLSSKVNFECLAKLFEDEPADARTPKKVRFDLASDNHDKFQSKVQDPKDDELGSEDNFEDGDKDWCNNENMDAAYFPEDDGYNYDEDYY 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03067 590 SUPERFAMILY Cyclin-like 84 163 IPR036915 -
Tsu07g03067 590 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Tsu07g03067 590 Pfam Transcription factor TFIIB repeat 172 259 IPR013150 GO:0017025
Tsu07g03067 590 Gene3D - 63 165 - -
Tsu07g03067 590 Gene3D - 173 263 - -
Tsu07g03067 590 MobiDBLite consensus disorder prediction 386 402 - -
Tsu07g03067 590 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Tsu07g03067 590 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Tsu07g03067 590 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Tsu07g03067 590 MobiDBLite consensus disorder prediction 371 385 - -
Tsu07g03067 590 MobiDBLite consensus disorder prediction 526 552 - -
Tsu07g03067 590 Pfam Brf1-like TBP-binding domain 399 517 IPR011665 -
Tsu07g03067 590 MobiDBLite consensus disorder prediction 357 402 - -
Tsu07g03067 590 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 520 IPR029529 GO:0000126|GO:0000995|GO:0006383
Tsu07g03067 590 CDD CYCLIN 96 140 IPR013763 -
Tsu07g03067 590 MobiDBLite consensus disorder prediction 526 573 - -
Tsu07g03067 590 Gene3D Single helix bin 391 441 - -
Tsu07g03067 590 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 520 IPR000812 GO:0006352|GO:0070897
Tsu07g03067 590 SUPERFAMILY Cyclin-like 172 261 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03067 Tsu-Chr7 36523198 36537429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03067 1 501 Inorganic Solute Cotransporters AT2G01280 39.306 1.22e-92 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03067 K15196 - gmx:100789154 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03067 07 36523198 36537429 Tsu07g03067 07 36523198 36537429 ECH