Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03056 ATgcgcaacaacaacaactcttCACAAGGTAGCAGAAGcatcaacaataacaatatGAGCATTTTATCTTCTCGAACAAGTTCACGTTCTGTAACAGAAACCGTTAACGGTTCACACAAGTTCGTAATTAAGGGATATTCACTTGCAAAAGGAATGGGAGTTGGAAAACACATAGCTAGCGAAACTTTTACCGTCGGTGGTTATCAATGGGCAATTTACTTTTATCCTGACGGTAAAAATCCTGAAGATAATTCTGCATATGTTTCTGTTTTCATTGCTCTTGCTTCTGAAGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAAAGTCCTAATGGTAAACATAAGGTTCATAGTCACTTTGATCGATCTCTTGAAAGTGGTCCTTATACTCTCAAGTATAGAGGCAGTATGTGGGGTTATAAGCGGTTTTTCAAACGTGCTCAACTTGAGGCCTCATCCTTCCTTAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTTGTGTCGTCCATAGATTGTTCCAAACTGACCACCATACATGTGCCTGAATCTGATATTGGATCGCATTTTGGCATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGGTGGAGAAAGGTTTCATGCACACAAGCTTGTTATGGCAGCTCGGTCACCTGCATTTGAAGCCGAGTTTTTCAATCGGATGGAGGAAGATGACTGTGATGTAGTTGTTACAGACATGGAACCTAAGGTTTTCAagGCTTTgcttcattttatttataaagacACTCTTATAGAAGATGAGGAGTTCTTCATGTCACGCTCATCATTCCTGCCTTCAATATCTGAAACATTTGCAGCAAAATTATTAGCTGCTGCGGAAAAGTATGATTTGCCTAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGAAATCTCTATAGATTCTGTTGCCTATATTCTGGCACTTGCCGATCGCTATCATGCTACGGAGTTGAAGTCCATCTGTCTACAGTTTTCTGCTGAAAACCTTGTTGCTGTAATGCAGTCTGATGGTTTTGAGTATCTAAAGGAACACTGTCCGTTGCTGCAATCAGAACTGCTCAAGACAGTTGCAGGAGGCGAAGAGGAATTTAGTGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCAAGTTTCTGATGGCGGTGAGACTAATGATAGGAGCGTAAGACAACAGACCTGGGAAAACGGAGTTGACAGAGGTCAGAACTTATGGGTTAACCTTTCTGATGGTGTTAACAATGATAGGAGTCCAGGGCAAGAAGCTTGA 1323 0.3998 MRNNNNSSQGSRSINNNNMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSPAFEAEFFNRMEEDDCDVVVTDMEPKVFKALLHFIYKDTLIEDEEFFMSRSSFLPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKEISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSDGFEYLKEHCPLLQSELLKTVAGGEEEFSGEGKCRSVWAQVSDGGETNDRSVRQQTWENGVDRGQNLWVNLSDGVNNDRSPGQEA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03056 440 SUPERFAMILY TRAF domain-like 33 172 - -
Tsu07g03056 440 SUPERFAMILY POZ domain 184 315 IPR011333 -
Tsu07g03056 440 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 174 IPR008974 GO:0005515
Tsu07g03056 440 CDD MATH 37 170 IPR002083 GO:0005515
Tsu07g03056 440 CDD BTB_POZ_BPM_plant 192 314 - -
Tsu07g03056 440 Pfam BTB/POZ domain 198 315 IPR000210 GO:0005515
Tsu07g03056 440 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 390 IPR045005 GO:0016567
Tsu07g03056 440 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 20 390 - -
Tsu07g03056 440 ProSiteProfiles BTB domain profile. 206 272 IPR000210 GO:0005515
Tsu07g03056 440 SMART BTB_4 206 317 IPR000210 GO:0005515
Tsu07g03056 440 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Tsu07g03056 440 MobiDBLite consensus disorder prediction 1 31 - -
Tsu07g03056 440 Gene3D - 316 390 - -
Tsu07g03056 440 Gene3D Potassium Channel Kv1.1; Chain A 182 311 IPR011333 -
Tsu07g03056 440 CDD BACK_AtBPM-like 314 375 IPR034090 -
Tsu07g03056 440 SMART math_3 41 153 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03056 Tsu-Chr7 36407290 36412396 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu07g03056 BTB 7.5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03056 K10523 - gmx:100809683 778.859