Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g03006 ATGCAGAATCAGAAAGCAGGAATTTCTGTAACAAACAAAGGAGGAAAGTTCAAAGGAAGAAACAGAAACAGCAATAACACAAACAAATTTGTTGGTGTTAGACAAAGGCCATCAGGTAGATGGGTTGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTCGGAACATTTGAGACAGCTGAGGAAGCAGCTAGAGCTTACGATGAAGCCGCGTGTCTTCTTCGAGGTTCGAACACTCGAACCAACTTCATCACTCATGTTTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGcgataaaaaaaaggaagatgCTGTTACTTCTTCAACAAGTAACAGCAATACTAGTAATGCTAGCACCATTAGTAATGCTAATACAATCACAAGGAACAATGATAACAAGGAGAATGCTATTTCAAGTGAAGCTACTCAAAAAACAGAACTTTTTGAGGATGTTTATAAACCCGATTTGAGCAATTTCAAGGAGGATTTTGAGTCAGGTTCGAAATCCAACATTTCGTGGGGTTTCGGACCTGTCTTTGATAATTTTCCTTTTGCTCAATTATTGGATATATCTAAGACTAATGGCATGAATGATGAATCTAACTTGGAAATTTCAgaatttgaaagaatgaaagTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTGCATGAGTACATGGAAACTGTTCATGAATCTAATGAAGCCTTATGGGATCTTCCACCTTTGTGCTCATTGTTCTGTTAA 789 0.3587 MQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKKKEDAVTSSTSNSNTSNASTISNANTITRNNDNKENAISSEATQKTELFEDVYKPDLSNFKEDFESGSKSNISWGFGPVFDNFPFAQLLDISKTNGMNDESNLEISEFERMKVERQISASLYAINGVHEYMETVHESNEALWDLPPLCSLFC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g03006 262 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Tsu07g03006 262 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Tsu07g03006 262 MobiDBLite consensus disorder prediction 117 152 - -
Tsu07g03006 262 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Tsu07g03006 262 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 249 - -
Tsu07g03006 262 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Tsu07g03006 262 MobiDBLite consensus disorder prediction 1 31 - -
Tsu07g03006 262 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 4 249 - -
Tsu07g03006 262 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Tsu07g03006 262 MobiDBLite consensus disorder prediction 104 152 - -
Tsu07g03006 262 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Tsu07g03006 262 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Tsu07g03006 262 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g03006 Tsu-Chr7 35732317 35733105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g03006 16 262 AP2-EREBP Transcription Factor Family AT5G19790 43.529 1.15e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g03006 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g03006 K09286 - gmx:100796898 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03006 07 35732317 35733105 Tsu07g03006 07 35732317 35733105 ECH
Tsu07g03006 07 35732317 35733105 Tsu06g02872 06 37842732 37850105 PCT