Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02942 ATGTTAGGAGATGAATTTGGAACTGCTTCAAATATTAAAAGTAGGGTAAATCGACAATCTGTACTCGGAGCCATTACTTATGCTCAACAGAAGTTGAAATTATATAACAAGGTTCCTCCAAATGGATTAGTCATTTATACTGGTACTGTTGTCACTGATGAAGgcaaggaaaagaaaaagacttATGATTTTGAACCATTCAAACCGATCAATGCATCGCTTTATCTTTGCGATAACAAGTTTCATATGGAAGGTCTAAATGAACTTCTAGGATCTGATGACAAGTATGGTTTCATTGTTATGGATGGAAATGGAACTCTTTTTGGGACTTTAAGTGGAAATACTCGTGAGGTACTTGATAAATTTACTGTCGATCTACCAAAGAAGCACGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGATCGTCTTAGGATGGAAAAACGGGCACAATTACGAAAATATTTCGAAGAGATAAGACAAGAAACCGGAATATATGTTTACGGAGTTGATGACACATTGAAGGCCCTAGAGATAGGTGCTGTTGAAACACTCATTGTATGGGGGTATTTGGATATTAATAGGTATGTGCTGAAAAATGCTACCACCGGTGAGATTGTAATAAAACATTTGAAGAAGGAACAAGAAGCTGATCAAAGCAACTTCCGCGATCCGGCTACCAATGCAGACTTGGAGGTTCAGGAGAAGATGCCATTACTCGAGTGGTTTGCAAatgagtataaaaaaattggatgcTCTCTGGAGTTGAAGGGTCAATATTTTGTAGAGGCTTTGGTGGTATTGGAGGTATGCTTCGCTACTAGCTTGATATCAGATGATGATGGTGTAAAAGCGCCGGCGAAAACCCTAGTTACTCCCAACCCATTCCTTTGCGTTTCAGgCTGTTCTTTCTGTCTACATAAACAATGGCTGACGGTGAATCAGACAAGAACATTCAGATATGGAAgataa 969 0.3777 MLGDEFGTASNIKSRVNRQSVLGAITYAQQKLKLYNKVPPNGLVIYTGTVVTDEGKEKKKTYDFEPFKPINASLYLCDNKFHMEGLNELLGSDDKYGFIVMDGNGTLFGTLSGNTREVLDKFTVDLPKKHGRGGQSALRFDRLRMEKRAQLRKYFEEIRQETGIYVYGVDDTLKALEIGAVETLIVWGYLDINRYVLKNATTGEIVIKHLKKEQEADQSNFRDPATNADLEVQEKMPLLEWFANEYKKIGCSLELKGQYFVEALVVLEVCFATSLISDDDGVKAPAKTLVTPNPFLCVSGCSFCLHKQWLTVNQTRTFRYGR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02942 322 SMART eRF1_1_2 1 91 IPR005140 -
Tsu07g02942 322 SUPERFAMILY L30e-like 146 257 IPR029064 -
Tsu07g02942 322 Pfam eRF1 domain 1 4 89 IPR005140 -
Tsu07g02942 322 Gene3D eRF1 domain 1 1 90 IPR024049 -
Tsu07g02942 322 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 149 IPR004403 GO:0003747|GO:0006415
Tsu07g02942 322 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 152 255 IPR004403 GO:0003747|GO:0006415
Tsu07g02942 322 Gene3D eRF1 domain 2 93 140 IPR042226 -
Tsu07g02942 322 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 1 90 IPR024049 -
Tsu07g02942 322 Pfam eRF1 domain 2 95 160 IPR005141 -
Tsu07g02942 322 Gene3D - 144 263 IPR029064 -
Tsu07g02942 322 Pfam eRF1 domain 3 146 255 IPR005142 -
Tsu07g02942 322 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 149 - -
Tsu07g02942 322 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 152 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02942 Tsu-Chr7 34824585 34830781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02942 145 255 Eukaryotic Initiation Factors Gene Family AT3G26618 72.973 2.59e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02942 K03265 - han:110941723 274.633