Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02920 ATGAGTTTTCAAGATATTAAACATGGTTCCAATCCTCCCTCTCGTCGAACTCAGTCACCGTCGCAAGCTGTTGCTGCTGGAATTTTCCAGATCAATACCGCCGTTGCTACTTTCCGACGACTCGTTGATTCTGTTGGAACTGTTAAAGACACTCCAGAACATCGTCAGAAACTgcACAATACTAGGCAGAGGATATTGCAGCTTGTGAAGGATACTTCTGCTAAGCTTAAATCTTTGTCTGAATCTAATCGTGATGCTAATGCCAATGCTAgtaagaaaattgaagatgCAAAGCTGGCAAGAGATTTCCAGACCACGTTGCAAGAATTCCAAAAAGTTCAACAGCTTGCTTCTGAGCGCGAAACAACTTACACGCCTGCTGCACCAACTTCTTCTTTACCAACAAGCTCTGGCCCTGGTGAAGAATCGATTGAGATAGACGCCGAAAGCCAACCTTTTATCAGAGGGCAGTTGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCCTTCAATGAGGCCATGATTGAAGAAAGAGATCAAGGTCTTAGAGAGATAGAAGAACAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATTGATGACATTCAATCAAATATAGACACTTCTGCTGGTGCAACATCTCAAGCTAAGGTCCAGCTAGCCAAAGCTAACAAAAGTGtgaaatccaaaaataaatggTGTTGGTGGgtgcttttaatttttgtggCAGTGCTGGTCATCTTCCTCATTATACTTCTTACTTAG 801 0.392 MSFQDIKHGSNPPSRRTQSPSQAVAAGIFQINTAVATFRRLVDSVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLSESNRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASERETTYTPAAPTSSLPTSSGPGEESIEIDAESQPFIRGQLRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATSQAKVQLAKANKSVKSKNKWCWWVLLIFVAVLVIFLIILLT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02920 266 Coils Coil 69 89 - -
Tsu07g02920 266 Gene3D - 9 131 - -
Tsu07g02920 266 SMART tSNARE_6 168 235 IPR000727 -
Tsu07g02920 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Tsu07g02920 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Tsu07g02920 266 CDD SNARE_Qa 176 234 - -
Tsu07g02920 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
Tsu07g02920 266 MobiDBLite consensus disorder prediction 115 139 - -
Tsu07g02920 266 MobiDBLite consensus disorder prediction 115 144 - -
Tsu07g02920 266 Pfam SNARE domain 210 261 IPR000727 -
Tsu07g02920 266 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g02920 266 PANTHER SYNTAXIN 14 265 IPR045242 -
Tsu07g02920 266 Gene3D - 167 266 - -
Tsu07g02920 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Tsu07g02920 266 PANTHER SYNTAXIN-22-LIKE 14 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02920 Tsu-Chr7 34586298 34590466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02920 1 253 SNARE and Associated Proteins AT5G46860 59.004 9.11e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02920 - K08488 gmx:100787141 398.667