Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02908 ATGAGTCctatgaaaggaaagaaaaaacaaacatcaGGAACAACAAGCGAAACAACgaaacaagaacaacaacaacagcaacaaacaGCATGGGGAGGAAGATACCTCGGAGTAAGAAGAAGACCATGGGGAAGATACGCGGCGGAGATTCGAGATCCTTCTACAAAAGAAAGACACTGGTTAGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTACGATAGAGCTGCACGTGGCATGCGTGGATCACGTGCCAGAACCAATTTTGTTTACTCTGATACACCTCCAGGTTCTTCCGTTACTCCTATTCTCTCCCCcgaccaacaacaacaacaacctcaaactTTTCATGACCTTTCTTTTGTTCTTCAACCCGACCCGGTTCCTTGTCTTGACCCGGTTTCAATCATAACTTCCTCCGCTAATTACGGTTACGGTTACAATGaggaaattaataataataataattattttaataaatataatcttCCTCTTCATTCTCCTCAAGTTCCTCTTGCCACATTGGAGGCTAGTATTAATAACAATGGAAATTCCTATTTTAACCTTGCTAGTAATACTACTACTAGCAGTGTAGAGCTTCCTCCTTTGCCACCAGATATTACAAGCTCCACGTGTTATGATCAGGGTAACTATGGATTCAACGGTGGAGATCATGatcatgataatgataatggGTATTATTATTCTTCATCATGGGAGCAGAATGTGgattgttataataataataatcaaatgtTGGGTACAAATATGGGAGGTGCAGAgagtaataataatactacaACATTGGCAGGTTCTGTTAATGGTAGTACTTTTGATTTTGGGAGCTCTTCCTTTTTCTTCTGA 867 0.3391 MSPMKGKKKQTSGTTSETTKQEQQQQQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARGMRGSRARTNFVYSDTPPGSSVTPILSPDQQQQQPQTFHDLSFVLQPDPVPCLDPVSIITSSANYGYGYNEEINNNNNYFNKYNLPLHSPQVPLATLEASINNNGNSYFNLASNTTTSSVELPPLPPDITSSTCYDQGNYGFNGGDHDHDNDNGYYYSSSWEQNVDCYNNNNQMLGTNMGGAESNNNTTTLAGSVNGSTFDFGSSSFFF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02908 288 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Tsu07g02908 288 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Tsu07g02908 288 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Tsu07g02908 288 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Tsu07g02908 288 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 288 - -
Tsu07g02908 288 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 10 288 - -
Tsu07g02908 288 MobiDBLite consensus disorder prediction 1 32 - -
Tsu07g02908 288 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Tsu07g02908 288 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Tsu07g02908 288 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Tsu07g02908 288 MobiDBLite consensus disorder prediction 1 34 - -
Tsu07g02908 288 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02908 Tsu-Chr7 34386804 34387670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02908 14 226 AP2-EREBP Transcription Factor Family AT5G13910 46.948 3.54e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g02908 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02908 K09286 - gmx:100792421 178.718