LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02891	ATGGCTCtcatttttcatcttcttcagtTTCTTCTCTTCATAACCCATCACGCAAATGCTTTCAATCCTTTCATTCCCACCGACGCATTGTCCCTTCTCAGTTTCAAAAACTCTGTCTCTTCTGACCCTTTAAATCTTCTCTCTGGTTGGAcccatttttcatcttctacATTCTGCAGTTGGTACGGTGTCACTTGCGGCGGAGACGGCAGAGTGACGTCACTTAATGTTACTGGTCTTCACGGCGGTGAATTGACGGCTTCTATTGGAGATATGTCTGAGTTAAGGGTTTTGTCTGTTGCTGGAAACATGTTTTCCGGTAAGATTCCGGTGAGTTTACTGAATCTCCGGGAACTTGAGGTTCTTGAGCTTCAAGGAAATAACTTTTCAGGGAAAGTTCCTTTTTTTAAGATGAGttgttttgaaaaacttaaacttgTTAATCTCTCTGGTAATGCTTTTTCTGATACGCTTCCGAATGGGTTAGTTTTTTCTAGGAATGTGAAAATTGTCGATTTGTCTAGTAATCAATTTTCTGGTTCCATTCCTTTGAATGATTCAAGTAGTTGTGATTCTTTGAAGTATTTGAAACTgtctaataattttttgaaggGTGAGATTCCACCACAGATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTTGATGGGAATATATTGGAAGGTGAAATACCTTATGAGATTGGGAATATTGTTGAACTTAGAGTTTTAGATGTTTCTAGAAACAGTCTCACTGGAGGGATCCCTATACAGCTAGCTAATTGTTTGAAATTGTCTGTACTTGTGCTTACTGATTTGTTTGATGATCGCGGTGGTTCTGATGAGGGAAGTTTGGTGGACGATAGGTTTAGAGGTGAATTTAATGCTTTTGTTGGGAATATTCCTCATGAAGTTTTGTTGCTTTCGAGTTTGCGGGTTTTGTGGGCACCTAGAGCGAATCTCCATGGACGGTTGCCTCCTGCTGGATGGACAGATTCATGCTCTCTTAGAGTACTCAATTTGGCTGATAATTATGTTACTGGTAGTGTGCCCGAGAGTTTGGGGATGTGTAagaatttgacttttttggacTTGAGTTCTAACAATTTAGTTGGATACATAACTCTGCATCAGCTTCGGGTTCCATGTATGACGTATTTCAACGTAAGCAGAAATAATATATCTGGTATGCTTCCGGGATTTAGGAAAGAAAGGTGTAAACTGAGCAGTGTTGTTGCGCTAGAACCTGTGTTTCTAGAATTGGAAGGTTTGAATGATGCATACTTAAACATTCCTGTTTTGAGATTTCAACAGAATGCTTTCATTGGATCAGGTTTCGAAGAGACTATTGTCGTTAGCCATGATTTCAGCTGGAACAGTTTCGCGGGGTCATTGCCGTTGTTTTTTCTTGGAGATTATCTTTTTACTCCTACTCGTAATGTATCCTACATGCTGTctctcaataataataaattcaacGGAACTATTCCATACCGACTAGTTTCAAACTGTAATGACCTGAAGACATTGTCGGTTAATCTGAGTGCGAATCAACTATCCGGTGAAATTTCCCAAGAGTTGTTTCTTGGCTGCCTGCAGTTGACGGATTTTGAAGCGGCATATAATCAAATTGATGGATCAATTGTACCTAGTATAGGTGAGTTGGCGTTGCTTCAGCGTCTTGATTTGAGTGGTAACAAACTATCAGGAGCACTGCCGAATGAGTTGGGAAACCTGAAAAACATGAAATGGATGCTTTTAGGAGGAAACAATCTGACAGGGGAAATTCCTTACCAATTTGGTGGATTGTCGTCCCTTGTTGTTTTGAATGTATCTCACAATGCTCTAATTGGAACAATTCCAACAACTTTGACAAATGCAACAAGTCTTGAAATTCTGTTACTAAATCACAACAACCTTTCTGGAGAAATACCTTTATCTGTTTCTGCTCTTTCCAAGCTTGTTCAACTAAATGTTTCCTTCAACAATCTTTCCGGTCATATTCCTCATCTTCAACACCCGAGTGATTGTGATTCATATATAGGGAATAAAAACCTGCACTCTTGCTCTGATATATATTTTGACCCACCTTATAACTCAGTTCCTATTGCAGTCAATAATTCACATAGTCGTAGAGGGAGGAAAGTAAAGACCGTGGTTATTGCGTTGGCCATTTCTGCTTTTGTGGCTCTCTGCATACTATTGGGAATAGTGTTGGTGATTTGTTTTAGGAGGAGTAAAATTACTCGGATCAGCAGCATCAGAAGGCAAGAAGTGGTGAcctttcaaattgttccaataGAACTGAGTTATGATAGTCTTGTCACAGCTACCGGAAATTTCAGCATCCGGTATCTAATCGGCACTGGTGGCTTCGGCTCAACATACAAGGCAGAGCTATCCCCAGATTTTCTTGTTGCCATAAAGAGGCTGTCAATAGGTAAATTTCAAGGAATTCAACAGTTCGAAACAGAAATTAGGACGCTTGGGAGAATTCGACACAAGAATCTTGTGACTCTAATTGGCTATTATGTAGGAAAAGCTGAGATGTTGTTAATTTACAATTACCTCTCTGGTGGAAACCTTGAAGCTTTCATACATAATAGGTCAGGGAAAAATGTGCAGTGGCCGGTTATTTACAAAATTGCGAAAGACATTGCCAAGGCCATTGCTTACCTTCATTATGCTTGTGTTCCTCGAATAGTTCACCGAGATATCAAGCCTAGCAACATTTTACTCGATGGAAATCTAAATGCCTACTTATCCGATTTCGGCTTGGCACGACTGCTTGAGGTATCTGAGACTCATGCCACTACCGATGTGGCCGGCACGTTTGGTTATGTTGCACCTGAATATGCCATCACTTGTAGGGTTTCTGATAAAGCCGATGTTTATAGCTATGGTGTGGTGCTATTAGAAATGATATCAGGAAGAAGGTCTCTTGATCCATCGTTTTCCTGTTATGGAAATGGATTCAATATTGTACCGTGGGCGAAGCTGCTAATGACTGAAGGTCGTTGTTCTGAGCTATTTTCGTCAGCTTTGTGGGAATCAGGACCTAAGGAAAAGTTGATGGGGCTTCTAAAGATTGCATTAACATGCACAGAAGAGACTCTTTCTATTCGACCATCAATGAAGATTGTACTTGAGAAATTGAAACAGTTGAAAAGTTAA	3174	0.3872	MALIFHLLQFLLFITHHANAFNPFIPTDALSLLSFKNSVSSDPLNLLSGWTHFSSSTFCSWYGVTCGGDGRVTSLNVTGLHGGELTASIGDMSELRVLSVAGNMFSGKIPVSLLNLRELEVLELQGNNFSGKVPFFKMSCFEKLKLVNLSGNAFSDTLPNGLVFSRNVKIVDLSSNQFSGSIPLNDSSSCDSLKYLKLSNNFLKGEIPPQIGKCRNLRTLLVDGNILEGEIPYEIGNIVELRVLDVSRNSLTGGIPIQLANCLKLSVLVLTDLFDDRGGSDEGSLVDDRFRGEFNAFVGNIPHEVLLLSSLRVLWAPRANLHGRLPPAGWTDSCSLRVLNLADNYVTGSVPESLGMCKNLTFLDLSSNNLVGYITLHQLRVPCMTYFNVSRNNISGMLPGFRKERCKLSSVVALEPVFLELEGLNDAYLNIPVLRFQQNAFIGSGFEETIVVSHDFSWNSFAGSLPLFFLGDYLFTPTRNVSYMLSLNNNKFNGTIPYRLVSNCNDLKTLSVNLSANQLSGEISQELFLGCLQLTDFEAAYNQIDGSIVPSIGELALLQRLDLSGNKLSGALPNELGNLKNMKWMLLGGNNLTGEIPYQFGGLSSLVVLNVSHNALIGTIPTTLTNATSLEILLLNHNNLSGEIPLSVSALSKLVQLNVSFNNLSGHIPHLQHPSDCDSYIGNKNLHSCSDIYFDPPYNSVPIAVNNSHSRRGRKVKTVVIALAISAFVALCILLGIVLVICFRRSKITRISSIRRQEVVTFQIVPIELSYDSLVTATGNFSIRYLIGTGGFGSTYKAELSPDFLVAIKRLSIGKFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMLLIYNYLSGGNLEAFIHNRSGKNVQWPVIYKIAKDIAKAIAYLHYACVPRIVHRDIKPSNILLDGNLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYAITCRVSDKADVYSYGVVLLEMISGRRSLDPSFSCYGNGFNIVPWAKLLMTEGRCSELFSSALWESGPKEKLMGLLKIALTCTEETLSIRPSMKIVLEKLKQLKS	1057

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g02891	1057	Gene3D	Phosphorylase Kinase; domain 1	743	856	-	-
	Tsu07g02891	1057	Gene3D	Transferase(Phosphotransferase) domain 1	857	1056	-	-
	Tsu07g02891	1057	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	901	913	IPR008271	GO:0004672\|GO:0006468
	Tsu07g02891	1057	SUPERFAMILY	L domain-like	298	689	-	-
	Tsu07g02891	1057	ProSitePatterns	Protein kinases ATP-binding region signature.	787	815	IPR017441	GO:0005524
	Tsu07g02891	1057	Gene3D	Ribonuclease Inhibitor	26	81	IPR032675	-
	Tsu07g02891	1057	Pfam	Protein kinase domain	786	980	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g02891	1057	SUPERFAMILY	Protein kinase-like (PK-like)	758	1052	IPR011009	-
	Tsu07g02891	1057	Pfam	Leucine Rich Repeat	558	579	IPR001611	GO:0005515
	Tsu07g02891	1057	CDD	STKc_IRAK	787	1055	-	-
	Tsu07g02891	1057	SMART	serkin_6	781	1056	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g02891	1057	Pfam	Leucine rich repeat N-terminal domain	27	66	IPR013210	-
	Tsu07g02891	1057	Gene3D	Ribonuclease Inhibitor	282	413	IPR032675	-
	Tsu07g02891	1057	SUPERFAMILY	RNI-like	76	398	-	-
	Tsu07g02891	1057	ProSiteProfiles	Protein kinase domain profile.	781	1055	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu07g02891	1057	Gene3D	Ribonuclease Inhibitor	82	273	IPR032675	-
	Tsu07g02891	1057	Gene3D	Ribonuclease Inhibitor	428	672	IPR032675	-
	Tsu07g02891	1057	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2	7	1056	-	-
	Tsu07g02891	1057	PANTHER	RECEPTOR KINASE-LIKE PROTEIN XA21	7	1056	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02891	Tsu-Chr7	34131429	34136002	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g02891	8	1056	Receptor kinase-like Gene Family	AT3G02130	42.583	0.0	790

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XV	Tsu07g02891		Pkinase	3.9e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02891	-		-	cam:101512699	1695.63