Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02879 ATGCAAGAAACTACTATTGTATCGTGGCTTTCTCAAATGAATGTTCCTCGGGATGCTTTTAGGTTGGTAGTGGCAAAAATATTGGAATGTGCTCGTGATATGGTTAAGACACATAAGAATCTAATGATTCTTCCTATTCGAGTCAATCTTGTCGTTACAAGAGCTAGCGAAGATGAAAGTGATGAAGATGACGGTGATGGAAGCGATGAAAATATCCAAAGCGATGAAACGGAAAAGTCATGTGTTGAAGAGGGATCGAAGACGGTGAAAGTTGGAATAGAGGAAAACTGTgcaatttgttttgaaaattttaattttaatgttggAGTTCCTATGCCATGTATGCACGTGTTTCATATAAAATGTATCCGTGATTGGTTAGAGAAAGGCAATACATGTCCGATATGTAGGTTTAAGTTGTCCACTAATTAA 432 0.3542 MQETTIVSWLSQMNVPRDAFRLVVAKILECARDMVKTHKNLMILPIRVNLVVTRASEDESDEDDGDGSDENIQSDETEKSCVEEGSKTVKVGIEENCAICFENFNFNVGVPMPCMHVFHIKCIRDWLEKGNTCPICRFKLSTN 143
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02879 143 MobiDBLite consensus disorder prediction 55 84 - -
Tsu07g02879 143 SUPERFAMILY RING/U-box 96 141 - -
Tsu07g02879 143 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 49 140 - -
Tsu07g02879 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 141 IPR013083 -
Tsu07g02879 143 SMART ring_2 97 136 IPR001841 -
Tsu07g02879 143 MobiDBLite consensus disorder prediction 57 71 - -
Tsu07g02879 143 Pfam Ring finger domain 96 137 IPR001841 -
Tsu07g02879 143 ProSiteProfiles Zinc finger RING-type profile. 97 137 IPR001841 -
Tsu07g02879 143 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 140 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu07g02879 Tsu-Chr7 33987334 33987765 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02879 44 140 C3H Transcription Factor Family AT1G14200 32.323 6.43e-11 55.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02879 - - cam:101499491 154.066