Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02878 ATGGTGGCACAGTCTTTAGAGATTCGCGATTCTATTGCGAATGTTGACTGTGGTGGTGGTAGTGTTGTTGTTCCGAAGGTTTCCGGTAAGAATGAGGTGAGCTCGACGGTGAAGATTAAGGTAAAATATACTGGAAAGAAAACGGAATCGACGGAAACGGTACCATTGCAGGTTCGAAGATCGAGTTCTCGAATCCAAGCTCAGCTGAAGGAAGCTGAGGAGATTCAGCGTCGCCGGAAAGCTGAAGGTTTAGCTGATGAAGAAAAACCTGATGAGGTTGTTACTCCGCCGAAGTCGAACAAGCGTGTTAAGAAAAGTTCCGGCGAGGTGACGAAAAGTTCCGGCGAGGTGAGTGTGAGTAAGGAAGGTGTTTCCGAAAACGAGACTAAGAAGGATGAGGTTGTTTTGGAGAAAGAGacgaagaagaaggagaagaaatcAGCTTCGTTAGTGAAACGTGACCTGATGGAGGTTCGGCATAAGAAAATAACGGCGGAGTCGGAAAATGGCGTTGCTGAAAATGGAGCTGGTGGTGCATTAGGTGATAAGAGCTTGACTGCTAAGGTCAAGGATACTATTAGGGTGTTTAACAAACACTATCTTCATTTGGTTCAGGAGGAGGAGGAAAGGGTTGCTAAAGCGAAAGCAGAAGCTGAGAAAAAAGGTGGTGGGAAGAAATCTGCTAAAAAATCTCCCAAGAAGAAATCTTCTAAAAATTCTCCGGAGAAAAAATCTCCTAAAAAATCTCCTGAGAATATATCAGCCAATAACGACACTCCAACTAAAGAAAAAAAGCACGCTGCCAAGCGACCTGATCTGAAGGCCTTAACAAAGATGCTGAAGAATAATGAGATACTGTATCCTGAGAAGAGAATTGGCCATATTCCAGGTATTGAGGTTGGCTATCAGTTTTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAATGGTATTGATTATATGGGCCAAAGTTATACCAAAGTGTACAACGAATACCAGTACCCAATTGCTGTGGCCATTGTTTTGTCAGGCATGTATGAGGATGATCTGGATAATGCCGAGGATGTTGTGTACACTGGGCAAGGTGGGCACAATCTGACTGGCAATAAGCGACAAGTGCAAGATCAAAAACTGGAGCGGGGTAATTTAGCACTCAAGAACTGCTCGGAACAAAGTGTGCCAGTTAGGGTGATTCGAGGTCATGACTCTACTAGCAGTTACACTCGGAAAGTGTATACATATGATGGCCTGTACAAGGTTGTCAATTATTGGGCGGAGAAGGGAATATCGGGCTTCACTGTTTATAAGTTTCGGCTTAGGAGGATTGATGGACAGCCTACATTAACAACACAACAgGTTTATTTCACATGTGGGCGTGTACCTGAGTCTGTAGCAGAAATAAGAGGGTTGGTTTGTGAGGATATCACTGAAGGTCAGGAAGATGTACCCATTCCAGTTACAAATTTGGTTGACGAATCCCCTGTTCCACCCACAGgTTTCAAATATTTAAAGTCTCTGAAAGTGGCAAAAAGTGTTGCGATTCCTGCAAATGCCTCAGGGTGCAAATGCAAAGGCAAATGTATTGATCCGAAAACTTGTGAATGTGCAAAGCGCAATGGCTCTGAATTCCCCTATGTAGCTAAGGATGGTGGCAGATTAATTGAAGCTAAAGATGTTGTATTTGAATGTGGTCCCAATTGTGGTTGTGATCCTGGTTGTGTGAACCGAACTTCTCAAAAAGGACTTCGATATCGTCTCGAGGTTTTCCGTACTGCCAAGAAAGGATGGGCTGTTAGATCTTGGGATTTTATACCTTCTGGTGCACCAGTTTGTGAGTACACAGGAATACTTGGTAGGGCAGATGATGTGGACAGTGTGTCGGAAAATAACTACATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGACTTGGTGTAAGAGAGAGGCGGTCACAAAATGTAGCATATGCTGCAAATCTGTTGGACAACTACGATGGCCAAGATTCTGAAGCACCAGAGTTTTGTATTGATGCGGGATCCACTGGAAATGTTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGATTGGCTCGAGTTGTGCTGTTTGCTGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTATGCGCTTGACAGTGTCTTGGACTCAGATGGGAAGATAAAGCAAATGGCTTGCTATTGTGGAGCTTCCGGCTGCAGGAAGCGGATGTTCTAA 2304 0.4332 MVAQSLEIRDSIANVDCGGGSVVVPKVSGKNEVSSTVKIKVKYTGKKTESTETVPLQVRRSSSRIQAQLKEAEEIQRRRKAEGLADEEKPDEVVTPPKSNKRVKKSSGEVTKSSGEVSVSKEGVSENETKKDEVVLEKETKKKEKKSASLVKRDLMEVRHKKITAESENGVAENGAGGALGDKSLTAKVKDTIRVFNKHYLHLVQEEEERVAKAKAEAEKKGGGKKSAKKSPKKKSSKNSPEKKSPKKSPENISANNDTPTKEKKHAAKRPDLKALTKMLKNNEILYPEKRIGHIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYTKVYNEYQYPIAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGNKRQVQDQKLERGNLALKNCSEQSVPVRVIRGHDSTSSYTRKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRIDGQPTLTTQQVYFTCGRVPESVAEIRGLVCEDITEGQEDVPIPVTNLVDESPVPPTGFKYLKSLKVAKSVAIPANASGCKCKGKCIDPKTCECAKRNGSEFPYVAKDGGRLIEAKDVVFECGPNCGCDPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRADDVDSVSENNYIFEIDCLQTIKGLGVRERRSQNVAYAANLLDNYDGQDSEAPEFCIDAGSTGNVARFINHCCEPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQMACYCGASGCRKRMF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02878 767 ProSiteProfiles Pre-SET domain profile. 524 586 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu07g02878 767 ProSiteProfiles Post-SET domain profile. 751 767 IPR003616 -
Tsu07g02878 767 Coils Coil 197 221 - -
Tsu07g02878 767 MobiDBLite consensus disorder prediction 214 274 - -
Tsu07g02878 767 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 101 767 IPR025794 GO:0016571
Tsu07g02878 767 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 92 766 - -
Tsu07g02878 767 MobiDBLite consensus disorder prediction 48 65 - -
Tsu07g02878 767 MobiDBLite consensus disorder prediction 66 109 - -
Tsu07g02878 767 ProSiteProfiles YDG domain profile. 293 446 IPR003105 -
Tsu07g02878 767 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 92 766 - -
Tsu07g02878 767 Gene3D SET domain 470 767 IPR046341 -
Tsu07g02878 767 Pfam SAD/SRA domain 292 450 IPR003105 -
Tsu07g02878 767 MobiDBLite consensus disorder prediction 258 274 - -
Tsu07g02878 767 ProSiteProfiles SET domain profile. 589 737 IPR001214 GO:0005515
Tsu07g02878 767 MobiDBLite consensus disorder prediction 45 185 - -
Tsu07g02878 767 Pfam Pre-SET motif 480 581 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu07g02878 767 SMART set_7 589 743 IPR001214 GO:0005515
Tsu07g02878 767 SMART preset_2 477 573 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu07g02878 767 Coils Coil 58 78 - -
Tsu07g02878 767 MobiDBLite consensus disorder prediction 123 167 - -
Tsu07g02878 767 Pfam SET domain 600 737 IPR001214 GO:0005515
Tsu07g02878 767 SUPERFAMILY PUA domain-like 275 466 IPR015947 -
Tsu07g02878 767 Gene3D - 276 462 IPR036987 -
Tsu07g02878 767 SUPERFAMILY SET domain 474 743 IPR046341 -
Tsu07g02878 767 SMART G9a_1 288 450 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02878 Tsu-Chr7 33968235 33976427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02878 279 767 EF-hand Containing Proteins AT5G13960 67.551 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu07g02878 SAD_SRA 1.9e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02878 K11420 - gmx:100796701 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02878 07 33968235 33976427 Tsu07g02878 07 33968235 33976427 ECH