Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02872 ATGTTGTTTTCCATTCCATTGATTATTATCTTTTCAAGCCTTTGCTTGCTAACCAAACAAAAAGAGATAAAAGAGAGCGATGAAGAGATCATTGTGGGGCATAATAATAAACAAGCGGCGGGTTACATTGAAGAACCTATCCTGAATTCTCAAAGCAAGGAAACTTTCAAAGAATGTCGAAAAAATCACGCTTCAAGCATTGGGGGCTATACTCTTGATGGTTGTTGCGAGTTTTTATCTGATGGAGTTGAAGGTACTATCGAATTTTTCAGATGTGCTGCTTGTAAATGTCACCGAAACTTTCACCGCAAAGAAACTGTTGCTAAAGAATAG 333 0.3754 MLFSIPLIIIFSSLCLLTKQKEIKESDEEIIVGHNNKQAAGYIEEPILNSQSKETFKECRKNHASSIGGYTLDGCCEFLSDGVEGTIEFFRCAACKCHRNFHRKETVAKE 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02872 110 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Tsu07g02872 110 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 105 IPR006456 -
Tsu07g02872 110 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 27 107 - -
Tsu07g02872 110 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 107 - -
Tsu07g02872 110 Pfam ZF-HD protein dimerisation region 55 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02872 Tsu-Chr7 33867776 33868108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02872 52 106 ZF-HD Transcription Factor Family AT1G74660 63.636 4.36e-23 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu07g02872 ZF-HD_dimer 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02872 - - mtr:MTR_8g069080 122.864