Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02869 ATGAAGGCACCTCAGCGAAACTCTAGAACACATTCTAGGAGTCACTCAGGAAGACGGACAGTTGGATCGCCCCAATATGAGGGGAAGACAACAGGAACAGTTTCTTCTCATAGAAATCAACAGACTACCGGGTCTGTATATTCTCAAGGAAGCACCCCTTTGGCAGGGAGGAAATCTCAGATGGTGAATGGCAACCACTTGCTCAATTTTCAGTATGATCCAATATCACGTTCTCAACAAAGGGGTACCCCCCCTCCCCCTCCAGCAAGAAGGCAGAGGAAGAGAAGACCATACAATAAAGATCTGTTTTTGCAggcaaatttcaaatttatggTGCTAGATTCAGGAAACTATTCACCTGAGTCAATGGACCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCGACTCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCATCCGCTGTGTCCCCAAATAACCTCATGTGGGCACATTTTCTGTTTCCCATGTATACTACAATACTTGTTGTTGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCGTTGTGCTTTGTGATGATATCTGTCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCAGTTTCTTAACAAGAAAGAAGGATTCATTTACTCtttcacataaaaataaacaagagaCTGATAACTCATCATGTAGCCAACGAGATGTATATGATCCCTTTTCTAAGTTCACACTCACTTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGACGACCTGGAGAAGCTTCCATATGTTAGTGCTGCAATGCAACAATTAAAACAGAGAAAGAAGTATTGGAATGAGCACAAGGCCTATGACAGTGAAAAATCTTCTAACATCGTTGATTGTGCACACCAGATACCATCAATATCTGCAAATGCTGTGGATACTGATGACGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGATTTCCCTGATCAAAGTAAGGCTGTAATGTTTGATAAGCCAACCGCTGGAGCCTGTCAGGATGAAACTCTGGATGTGGACAAGGTACTAGTAGATCAGGAAATGAATCTGTCTTCTTCGTATGAGGAGAAAAATTGTATTCAAGGGCATTCAAATGGCATTGGAGATGCAAAGGAGAATGATTCGTACAATTTCTATCAGGCTGCGGATGGTCAACATATAATTCTTCATCCTTTGAACACAAAGTGCTTACTGCACCATTATGGTAGCTATGATAATCTTCCTCACAGAATAAGTGGAAGGATTTTACAATTGGAGACAGTAACTCAATCTGAGGCTATGAGGAGGCGGTATcgatttttaagtcattttccGCTAACCACAATATTTCAGCTTTGTGAAGTTGATTTGAGTGAGATATTACCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAATCGCGCAAACCAGAGGAAGCAACTTGCAAAGAAGGaacaaaaggaaaaattaaaGGCTGAAGCTGCTTCTAATTATGCTCTTTCCATGTCAACCCATCATCAGTTTATTTCTCGTGATGATCCTCCCACATTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAGCTTTGTCATCAAGTCCTCCAGTTGTTGGTGAGAAGAAATTGTTCTCAAGTGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTTCAAACTCAAGAAACTAGCAATCTACATAATCGCAATTCGATTGCTGATTCTTCTGGTTTGAGGAATGGGGAGACACTATCATACTCCAACATCATATCTAGAGCGGAATCTAATGGAAGTTCGAATGCACCAAAGACAAATGATTTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTTCTGTCAACAGCTGGTGGCAGGCGTTATTAA 2001 0.4003 MKAPQRNSRTHSRSHSGRRTVGSPQYEGKTTGTVSSHRNQQTTGSVYSQGSTPLAGRKSQMVNGNHLLNFQYDPISRSQQRGTPPPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEHPLCPQITSCGHIFCFPCILQYLLLGEEDHKGDCWKRCPLCFVMISVKDLYTLHITNVKQYQVGDNIEFSFLTRKKDSFTLSHKNKQETDNSSCSQRDVYDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSAAMQQLKQRKKYWNEHKAYDSEKSSNIVDCAHQIPSISANAVDTDDESCSNGSRTSSTDFPDQSKAVMFDKPTAGACQDETLDVDKVLVDQEMNLSSSYEEKNCIQGHSNGIGDAKENDSYNFYQAADGQHIILHPLNTKCLLHHYGSYDNLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTIFQLCEVDLSEILPPEALAPFMDEIKNRANQRKQLAKKEQKEKLKAEAASNYALSMSTHHQFISRDDPPTFSMDDFEALGNSALSSSPPVVGEKKLFSSVTRLGFAAGHDSPSFQTQETSNLHNRNSIADSSGLRNGETLSYSNIISRAESNGSSNAPKTNDLGKKGKKPSRVLLSTAGGRRY 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02869 666 CDD RING-HC_RNF10 147 194 - -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 17 58 - -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 1 16 - -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 71 97 - -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 593 644 - -
Tsu07g02869 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 253 IPR013083 -
Tsu07g02869 666 Coils Coil 505 525 - -
Tsu07g02869 666 Pfam Zinc finger, C3HC4 type (RING finger) 147 193 IPR018957 GO:0046872
Tsu07g02869 666 ProSiteProfiles Zinc finger RING-type profile. 147 193 IPR001841 -
Tsu07g02869 666 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 1 58 - -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 592 666 - -
Tsu07g02869 666 MobiDBLite consensus disorder prediction 338 360 - -
Tsu07g02869 666 SMART ring_2 147 193 IPR001841 -
Tsu07g02869 666 PANTHER RING FINGER 10 FAMILY MEMBER 23 662 IPR039739 -
Tsu07g02869 666 SUPERFAMILY RING/U-box 146 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02869 Tsu-Chr7 33834652 33840828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02869 56 603 C3H Transcription Factor Family AT3G26730 57.624 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02869 - - gmx:100798764 1048.11