LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02866	ATGGCTCTTGATTCATTCACTTCCGGTACTGCTTTGGAAGCTATTTCTGAAATTACAGACACCGTTTCAGAGTTTGTATTTGCTTCAAACGATGTCCTTGTGAAGAATGGTAGTTTTAAGGAACTTGGAGATTACTTGCAAAGAAAAGCCGTATCAGAAGAGATATTACAGAAAATCGAGTTAGGGATACAGGAAAGGAATTTCGACCGCTCCTATGCAAATGATTTGCTGCTTCTCATTGCAAATGCTCTTGGGATTACAAAAAAGCGGTCGACGTTAAAGAAAGAGCTTGAAGAGtttaaaagtgaaattgaaAATGAGAAAGACCGGGCTGAAGCCATGCAAATGGATCAAATCATTGCTTTGTTGGAAGGGAgttacttttgccaccctactCCTCATCAACCTGGGAAAAGGAACTCAAATACTTTGCAAAACGAGATTCTCTTTGGTACTAAACCCTTGGAGCCTTTACAGTCCTTTTTTTGCCCTATTACTCCAGATGTTATGGATGACCCTGTGGAAACTTCATCTGGGCAAACATTTGAGAGAAGTGCAATTGAAAAGTGTGAGGATAGTCAAGCTGCCAGAGATGCAACGGAGTTACCGGAGAAGCTTTCATGCTATGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGCCTCTCCACAGGACCAGATGATGTGAAGGTGATTATGGTGAAGATGTTAGCAGAAATTGAGTCAACAGACCACAATAAGGAGATCTTGTTTGACAGTGGCATTCTGGCTCCTCTTCTTCACACGGTCTCACATAATGATGTTCAGATGAAACTGGTTGCCCTTAAAGCTCTTCAGAATCTATCTAGTTTGATGAAAAATGGACTCGAAATGATTCGACAAGGATACACAGACAGGGTTTCATTGTTAGAATCCAATGAAGATGTTTTTAACCTTTTCTCTCTGGTTAGCTACACAGTGCCTGATGTTTTTAACCATCTCTCACAATATATTATCCAGACTTTTTATGCCCTGTGTCAGTCGCCGTCATCTTCAGATATCAGGAATAAGCTAAGAAAGTGTCCATCGGTTCTAGTATTGGTCAAAGATCACCAAAAGAGCAAGTGCTGTGAAGTTGTTTTCTTGCATGGTTGA	1155	0.3922	MALDSFTSGTALEAISEITDTVSEFVFASNDVLVKNGSFKELGDYLQRKAVSEEILQKIELGIQERNFDRSYANDLLLLIANALGITKKRSTLKKELEEFKSEIENEKDRAEAMQMDQIIALLEGSYFCHPTPHQPGKRNSNTLQNEILFGTKPLEPLQSFFCPITPDVMDDPVETSSGQTFERSAIEKCEDSQAARDATELPEKLSCYDQNVIQMAKANYFKHLLQRLSTGPDDVKVIMVKMLAEIESTDHNKEILFDSGILAPLLHTVSHNDVQMKLVALKALQNLSSLMKNGLEMIRQGYTDRVSLLESNEDVFNLFSLVSYTVPDVFNHLSQYIIQTFYALCQSPSSSDIRNKLRKCPSVLVLVKDHQKSKCCEVVFLHG	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g02866	384	Pfam	U-box domain	161	196	IPR003613	GO:0004842\|GO:0016567
	Tsu07g02866	384	SUPERFAMILY	RING/U-box	156	201	-	-
	Tsu07g02866	384	SMART	arm_5	250	290	IPR000225	GO:0005515
	Tsu07g02866	384	SMART	Ubox_2	160	217	IPR003613	GO:0004842\|GO:0016567
	Tsu07g02866	384	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	159	188	IPR013083	-
	Tsu07g02866	384	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	307	373	-	-
	Tsu07g02866	384	Pfam	Armadillo/beta-catenin-like repeat	250	290	IPR000225	GO:0005515
	Tsu07g02866	384	Coils	Coil	90	117	-	-
	Tsu07g02866	384	ProSiteProfiles	U-box domain profile.	156	190	IPR003613	GO:0004842\|GO:0016567
	Tsu07g02866	384	SUPERFAMILY	ARM repeat	208	354	IPR016024	-
	Tsu07g02866	384	Gene3D	-	189	369	IPR011989	-
	Tsu07g02866	384	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	52	189	-	-
	Tsu07g02866	384	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	190	302	-	-
	Tsu07g02866	384	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	307	373	-	-
	Tsu07g02866	384	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	52	189	-	-
	Tsu07g02866	384	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	190	302	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02866	Tsu-Chr7	33814050	33817429	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g02866	157	304	U-box Gene Family	AT1G68940	28.659	1.01e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02866	-		-	gmx:100799969	200.29