Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02862 ATGTCACAATCTCTGTCATTCACGGTGAAGAGGCGTGACCCTGAATTTATAAAGCCATCAAAACCAACACCTCATACAATAAAACTACTCTCAGACATAGATGACCAAGATGGATTGCGTTTTCAAATTCCTCTTATAcaattttacaaatataatCCAAATATGAAAGGGAAAGACCCTGTTGATGTTATTAGAAAAGCACTTGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGATTAAGGGAAGGTCCTGGTAGAAAACTTATGGTTGATTGTAATGATGAAGGTGTTTTGTTCATTGAAGCTGATGCTGATGTTAGACTTGAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTCTTTGAATGAACTTCTTTTTGATGTTCCTGGTACTTCAGAAGTGCTTAATACTCCATTGCTCATTATTCAGGTAACACGCCTCAAGTGTGGTGGTTTTATATTTGCCATTCGTCTAAACCACACAATGAGTGACACACTAGGTTTGACCCAACTTATGAGTGCCATAGGCGAAATATCTTGCGGGATGAAAGAGCCTTCAATTGCACCAGTGTGGCACAGAGAGCTACTAAATGCACGGAACCCACCAAGAGTGACATGCACTCATCGTGAATACGAACAAATTGCCGACACCAAGGGAACCATTATCCCGTTAGATGACATGATCCACCGCTCTTTCTTTTTCGGTCCCACCGAGGTAGCCTCTATTCGCGCTCTCCTTCCACCTCATCAACAAAAACACtccaattttgaaattatcACGGCATGCCTCTGGCGTTGTCGTACAATAGCATTACAACCAAATACTGACGAAGAAGTTCGCATAATAGTCATTGTTAACGTGCGTGGAAAGTTTAATCCTCCCTTACCAAATGGTTACTATGGTAATGCTTTTGCATTTTCTGCTGCAGTTGCAAGTGTAGGTAAACTAATTCAAAATCCGTTGGGGTATGCATTGGAGTTAATTAAAAAAGCAAAAGATGATGTCACAAGAGAATATATGCATTCAGTTGCAGATCTTATGGTTATAAAGAATCGACCTAATTTTACTGTGGTGAGATCGTTTCTAGTGGCTGATGTGACACGTGCTGCGTTTCGAGATGTTGATTTTGGTTGGGGGAAAGCTGTTTATGGGGGACCAGCTAAAGGAGGAGTTAGTGTCATTCCTGGTGTTGCTAGCTTTTATATACCATTTAAAAAAGCTAATGGAGAGGAAGGTTTGATCATACCGGTTTGTTTGTCAAATCAAGTCATGGAGAGAGTTCGTAATCATACTGATGAGGGTGTGACACAAGCAATTGCACAGAGTGAATTGGCTTTATTATTAAGTCAGTTTTCTGAAGTTTTTAAAGAAACTATCTCTTTGCTTCCTGAGAGAAGCCAAGTGCATCAAATCCAGTTAATTGTTGAATATGGTCCTGTAAATGTAAGACCATACAAATATCCACATCATCAGAAGCaagaaattgaaaaacaagTTACTGAATTACTATCTGTTGGTGTGATAAGATCAAGTATGAGTGCTTTCTCCAGCCCTGGTGTGGCTGTAGACCCTGAGAAAATTAAATGTGCCTTGGAGTGGCCTACACCAAAGAAAGTCAAGGGTGTTCGTGGGTTTTTAGGAGTCACAGAGTATTATAGGAAATTCATCAAAAACTATGGCAAACTTGCCAAACCTTTGACTGAACTGACTAAAAAGAACAATTTTGTATGGGGACCTGAAGCTGAAAGTGCTTTCAAATTGTTAAAAACTATCATGACCACACCTCCAATTTTAGTTTTACCAAATTTTGATGTACCATTTGAGGTGGAGTGTGATGCAGCAGGAAGGCGAATTGGTGCAGTGTTAATGCAGCAGAGACAACCGATAGCTTTTTTCAGCAAAGCTTTGTTTGAAGGGAATTTGACAAAGTCTGTGTATGAAAAGGAGCTCGTGAATTTGGTATTGGCAATTCAACACTATAGACATTATCTTTTGGGCAAGCCATGTGTGGTCTACACAGATCATAAGAGTTTAAAGCATTTCTTACAACAAAGAATCACCTCCCCTGATCAGCAATGTTGGCTAGCAAAACATCTTGGATACCAATTTGAAGTGAAATACAAACCTGGCTTAGAGAACAAGGTTGTTGATGCCTTATCAAGATGTCATGGTGATGCTGAAATGAATAGCATGGTGTCTTATCCTACATGGTTAGATGGAGAACAGTTACTACAAGAAGTTAGACAAGACCCCCATTTACAAAAGATTATTGAAATTGTGTTAACAGGTTCTGCTAAAGTTAAGGGATATATTGTCCAACAAGGAGTTTTGTTCTATCATGGTCGTTTGGTATTGTCCTCTAATTCACCTTATATTCCTTTACTACTAAAAGAATTTCATGAAACACCAATGGGTGGTCATTCTGGATTCCTAAGGACATACAGAAGAATAGCAGCAAACATTTATTGGTATGGTATGCAGAAGAGAATCAAAGATTATGTTAGGGCTTGTGACACTTTCCAAAGACAAAAATATGCAGCAACATCACCTGGAGGTCTTCTTCAACCTTTGTTCATCCCTAATGCTATTTGGGAAGATCTTTCCTTAAACTTCATTACTGGTTTACCTAAGTCTAAAGGATTTGAGCTTGTTTTGATAGTAGTAGATAGGCTTTCAATACATTCATTTCTTACTACTTAA 2709 0.3824 MSQSLSFTVKRRDPEFIKPSKPTPHTIKLLSDIDDQDGLRFQIPLIQFYKYNPNMKGKDPVDVIRKALAKTLVFYYPFAGRLREGPGRKLMVDCNDEGVLFIEADADVRLEEFGDALQPPFPSLNELLFDVPGTSEVLNTPLLIIQVTRLKCGGFIFAIRLNHTMSDTLGLTQLMSAIGEISCGMKEPSIAPVWHRELLNARNPPRVTCTHREYEQIADTKGTIIPLDDMIHRSFFFGPTEVASIRALLPPHQQKHSNFEIITACLWRCRTIALQPNTDEEVRIIVIVNVRGKFNPPLPNGYYGNAFAFSAAVASVGKLIQNPLGYALELIKKAKDDVTREYMHSVADLMVIKNRPNFTVVRSFLVADVTRAAFRDVDFGWGKAVYGGPAKGGVSVIPGVASFYIPFKKANGEEGLIIPVCLSNQVMERVRNHTDEGVTQAIAQSELALLLSQFSEVFKETISLLPERSQVHQIQLIVEYGPVNVRPYKYPHHQKQEIEKQVTELLSVGVIRSSMSAFSSPGVAVDPEKIKCALEWPTPKKVKGVRGFLGVTEYYRKFIKNYGKLAKPLTELTKKNNFVWGPEAESAFKLLKTIMTTPPILVLPNFDVPFEVECDAAGRRIGAVLMQQRQPIAFFSKALFEGNLTKSVYEKELVNLVLAIQHYRHYLLGKPCVVYTDHKSLKHFLQQRITSPDQQCWLAKHLGYQFEVKYKPGLENKVVDALSRCHGDAEMNSMVSYPTWLDGEQLLQEVRQDPHLQKIIEIVLTGSAKVKGYIVQQGVLFYHGRLVLSSNSPYIPLLLKEFHETPMGGHSGFLRTYRRIAANIYWYGMQKRIKDYVRACDTFQRQKYAATSPGGLLQPLFIPNAIWEDLSLNFITGLPKSKGFELVLIVVDRLSIHSFLTT 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02862 902 Pfam Transferase family 9 434 - -
Tsu07g02862 902 Gene3D - 4 215 IPR023213 -
Tsu07g02862 902 SUPERFAMILY DNA/RNA polymerases 519 711 IPR043502 -
Tsu07g02862 902 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 433 - -
Tsu07g02862 902 CDD RNase_HI_RT_Ty3 611 726 - -
Tsu07g02862 902 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 466 529 - -
Tsu07g02862 902 Pfam RNase H-like domain found in reverse transcriptase 580 673 IPR041577 -
Tsu07g02862 902 Gene3D - 530 621 IPR043128 -
Tsu07g02862 902 PANTHER - 8 433 - -
Tsu07g02862 902 Pfam Integrase zinc binding domain 795 848 IPR041588 -
Tsu07g02862 902 SUPERFAMILY DNA/RNA polymerases 451 525 IPR043502 -
Tsu07g02862 902 Gene3D - 216 433 IPR023213 -
Tsu07g02862 902 Gene3D - 761 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02862 Tsu-Chr7 33748149 33756921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02862 9 428 Monolignol Biosynthesis Gene Families AT5G48930 27.523 3.16e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02862 K19861 - gmx:100797017 668.692