Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02855 atggCTCCCAAATTTAACTCAATATCCGAAATCAACCACGGTTGTGCAACAATTCAAAATTCTATGTTTTCAACTAAGTTGATGTTTAATCCTGATTTCATAAGTGCCAATGATTTGAAGAAAAGGATGATGGAAAAAAATGATTCTCCGTCCCCTGTAATTTTCTTGATTCAAGATCGTAGTGTGTTGAGTGAAGAAGATGACTTCCTAAAGATCAGCCCTAGGATAACAATTGAGGGGTTGAAAGAAAGATGTGGGGAATCATCTTTTGTCGTGTTGGGAACAATCAAATACTTACTTGATACAGATGGATGGTGGTACACTGCCTGTcaatgtaacaaaaaatttattctaGACGAGGGTATGCACTATTGCTTTAAATGCAACAAACATGTGGACAATGTTACTCAAAGGTACTACATCAAAGTCTATGTAAGTGATTCGACTGATTCTGCCACATTCGTAATTTTTGACCGCAACGCGGCGACGTTGTTCAAAAAATCGGCATCTGAAATGATTGAGTCTGTCGGCATAATGTGTTTGAATAAGATTTGTTGGACAAGTTCGACGATAGTGTCACGTCTCCAAAGTAATGAAGCTATTGATTTAACTTCTGATTCAACCAATATTACCCCTTTCAAAAGGTCTTTTCCGTTTGATGGTGACTGTTCAAACAACTGCAATTCAAAAGTCGTGTTCAAGAACATCAAGATTGAAAAGGATTGA 726 0.3623 MAPKFNSISEINHGCATIQNSMFSTKLMFNPDFISANDLKKRMMEKNDSPSPVIFLIQDRSVLSEEDDFLKISPRITIEGLKERCGESSFVVLGTIKYLLDTDGWWYTACQCNKKFILDEGMHYCFKCNKHVDNVTQRYYIKVYVSDSTDSATFVIFDRNAATLFKKSASEMIESVGIMCLNKICWTSSTIVSRLQSNEAIDLTSDSTNITPFKRSFPFDGDCSNNCNSKVVFKNIKIEKD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02855 241 PANTHER REPLICATION FACTOR A 1, RFA1 16 173 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu07g02855 241 SUPERFAMILY Nucleic acid-binding proteins 78 198 IPR012340 -
Tsu07g02855 241 Pfam Replication factor-A C terminal domain 91 174 IPR013955 -
Tsu07g02855 241 CDD RPA1_DBD_C 90 174 IPR013955 -
Tsu07g02855 241 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 16 173 - -
Tsu07g02855 241 Gene3D - 61 214 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02855 Tsu-Chr7 33613952 33618476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02855 1 172 Core DNA Replication Machinery Family AT4G19130 29.730 2.02e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02855 - - mtr:MTR_6g445520 208.379