LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g02850	atGACTCACTCATCAGAATCTTCTTCTCGTAAAACAATGATCCCTTCATTTCTCTACGGTTCTTCCCCCAAAACCCTACCTGTTATTCACCAGATCATCAATTCCGGTTCCGTTTCCGCTCCTGTTCCCGGTACGCCGCCGTCTCCTTCCATGCGTTCAACTGGATCCACCGGATTCATGATTCCTTCTCCTAAGGAACCGTTCGGTAAGATCGAGATGTATTCACCGGCTTTCTATGCTGCTTGTACTGCTGGTGGAATTCTTAGCTGTGGTCTTACTCATATGAGTGTTACTCCTCTTGACTTAGTCAAGTGTAATATGCAGATTGACCCTGCCAAGTACAAGAGCATCTCATCAGGTTTTGGAGTTTTGCTCAAGGAGCAGGGTGTTAAGGGTTTTTTCCGTGGATGGGTGCCAACCTTGCTTGGTTACAGTGCACAGGGTGCTTGCAAATTTGGATTCTATGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGACCAGAGTATGCAGCAAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGACATTGCACTTTGCCCATTTGAGGCTGTTAAGGTCCGTGTTCAAACTCAGCCCGGTTTTGCAAGAGGTCTTGGTGATGGTCTGCCAAAATTTGTCAAGTCTGAAGGAGCTTTGGGGCTATACAAGGGATTGGTGCCTCTATGGGGACGTCAAATTCCATACACAATGATGAAATTTGCCTCTTTTGAGACCATTGTTGAGCAGATCTATAAGCATGCCATCCCCACACCAAAGAATGAGTGCAGCAAAGGGCTGCAACTTGGTGTCAGTTTTGCTGGTGGATACATTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAACGCCAAAGGTGCAACAGTTGGTGATGCTGTTAAGAAGTTTGGTGTGGTTGGTCTTTTCACCCGTGGTCTCCCCCTCCGTATTGTTATGATTGGAACACTTACCGGAGCCCAGTGGGGAATATATGATGCTTTCAAAGTCTTTGTGGGACTGCCAACCACTGGTGGTGCTGCTCCTGCTCCTGTTCCTGCCGAGATCGGAAATGCTGCATAA	1131	0.4642	MTHSSESSSRKTMIPSFLYGSSPKTLPVIHQIINSGSVSAPVPGTPPSPSMRSTGSTGFMIPSPKEPFGKIEMYSPAFYAACTAGGILSCGLTHMSVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSEGALGLYKGLVPLWGRQIPYTMMKFASFETIVEQIYKHAIPTPKNECSKGLQLGVSFAGGYIAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKFGVVGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPAPVPAEIGNAA	376

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu07g02850	376	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	275	354	IPR018108	-
Tsu07g02850	376	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	77	161	IPR018108	-
Tsu07g02850	376	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	174	258	IPR018108	-
Tsu07g02850	376	Pfam	Mitochondrial carrier protein	80	163	IPR018108	-
Tsu07g02850	376	Pfam	Mitochondrial carrier protein	178	262	IPR018108	-
Tsu07g02850	376	Gene3D	Mitochondrial carrier domain	170	356	IPR023395	-
Tsu07g02850	376	Gene3D	Mitochondrial carrier domain	21	169	IPR023395	-
Tsu07g02850	376	PANTHER	SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED	5	370	IPR044677	GO:0005315\|GO:1990547
Tsu07g02850	376	PANTHER	MITOCHONDRIAL PHOSPHATE TRANSPORTER	5	370	-	-
Tsu07g02850	376	SUPERFAMILY	Mitochondrial carrier	80	350	IPR023395	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g02850	Tsu-Chr7	33562788	33566825	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g02850	7	370	Chloroplast and Mitochondria Gene Families	AT5G14040	80.217	0.0	585

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g02850	K15102		-	gmx:548006	611.683

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g02850	07	33562788	33566825	Tsu06g02566	06	33109443	33113029	PCT

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