Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02817 ATGTGGAAGGCTACCGGAGAGGATTATTCAGTTGAACCAGCTGAGTCCATAAGGCCTTTATGCACCCTCATTGATGTTGGTCTTGTTAAGACCACAATCGGAAACCGCATCTTTGGTGCACTCAAGGGAGCTTTGGATGGAGCTACTTTCATAGGCTCTCCATCTCCTGGAAGAGGAGGGTATGAGGAATGTGTTGATGAGAAAAACAACCCAGCAAATGCTGAAGAAACTGCTTTTGATAAAGCGACCTGTTGCAGCAGAAAAAAAACTAGGCAAGCTGATGGCTGGACTTCATCCGATGATGAGGCAGAAACAGTAGAGCAAATCGATGAAGAGGCATATGCTGATGAGGAAGCAGTGGCTATAATATGCAGTGAACTTGTGCTTGTTTAA 393 0.4504 MWKATGEDYSVEPAESIRPLCTLIDVGLVKTTIGNRIFGALKGALDGATFIGSPSPGRGGYEECVDEKNNPANAEETAFDKATCCSRKKTRQADGWTSSDDEAETVEQIDEEAYADEEAVAIICSELVLV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02817 130 PRINTS Ribosomal protein L5 signature 23 42 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g02817 130 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g02817 130 PANTHER PHOSPHOPROTEIN PHOSPHATASE INHIBITOR 53 113 - -
Tsu07g02817 130 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 3 51 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g02817 130 Gene3D - 1 55 - -
Tsu07g02817 130 PANTHER PROTEIN PHOSPHATASE INHIBITOR 53 113 IPR007062 GO:0004864|GO:0009966|GO:0043666
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02817 Tsu-Chr7 33206280 33207897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02817 4 47 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 72.727 1.15e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02817 K02932 - atr:18448669 78.9517