Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02798 ATGGCAGATCCTTCTTCATCCATCTATGAGTTCTttaagcaacaacaacaacaaccttcaTCATCAAGAGGTGTTAGAAGatcctcttcatcttcaaccCCAAGAACTTTTCAATGTCATTTTTGTCATAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCATCAAAATGCTCACAAACTTGAAAGAGCTGCTGCAAAAACAAGAACTATTAACCTCAacaacaccaccaccaacaacaacaatggtACTGTCTCTTTCTCATCACCACAACCACAACAGTCACCACCTTCATTTTCATTCATGAATGAACCAAAAACCTTAACTATGTCTCATGAACAACAACTTCAACATCATTATGAATACCCTTATTGGCAAAACCTTGAAATGGAACAGTTTCATCAAACTTCTCCTCAGTTTCATCAAAACCTTGAATACCCAACAAACACTTTTCCTATGATGAATCCTTTCAATGGTTCTTCTGCTTCATACTCTACTTATCCTGATCAACATGTTTTCTACAACAATGTTGCTGCTGTTCCTACTTCTGATGATCAATTTGTTGTTGATGCTTCTTCTGACCAAGTCAATCTTGACCTCACACTTCACTTGTGA 615 0.3268 MADPSSSIYEFFKQQQQQPSSSRGVRRSSSSSTPRTFQCHFCHRKFYTSQALGGHQNAHKLERAAAKTRTINLNNTTTNNNNGTVSFSSPQPQQSPPSFSFMNEPKTLTMSHEQQLQHHYEYPYWQNLEMEQFHQTSPQFHQNLEYPTNTFPMMNPFNGSSASYSTYPDQHVFYNNVAAVPTSDDQFVVDASSDQVNLDLTLHL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02798 204 PANTHER ZINC FINGER PROTEIN JAGGED 11 204 IPR045320 GO:0003700
Tsu07g02798 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Tsu07g02798 204 SUPERFAMILY beta-beta-alpha zinc fingers 35 64 IPR036236 -
Tsu07g02798 204 MobiDBLite consensus disorder prediction 70 98 - -
Tsu07g02798 204 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Tsu07g02798 204 Gene3D Classic Zinc Finger 13 95 - -
Tsu07g02798 204 PANTHER ZINC FINGER PROTEIN KNUCKLES 11 204 - -
Tsu07g02798 204 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02798 Tsu-Chr7 32802160 32802774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02798 34 81 C2H2 Transcription Factor Family AT5G57520 57.143 9.28e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu07g02798 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02798 - - mtr:MTR_7g083210 132.88