Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02758 ATGCTATTGCTAGTTGTAAGTAGAGGTCAGAAGTTCCAACTGTGGAATCAACCTCGTACAAAATCTGTTGATCTGAATCTTTTACTTTGCAGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCGGACTCTTTTTACATAGAGATGAAAGAATTCTTTTCTGAGGACAAAATGTTGTTAAAAAAGCCACCATATTATCAAACAGGAGAGACACCCGACATGTGGTTTTGTCCCCAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCCGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAGTCAGATTTCCAAGATTTATTAGCAGCGCATCAGACAGAAACCAAGAAGAGTGTAGCACAGCTGCTGATATAGTTGAAATGTTTCAATTGCAGACTCGAAAGATGGATGTCACAACTCAAGTGGAAGAAGTAGTTGTATCTTCCGATGGAGAGGAAATCAACGAAGAAAATAATACATGTGAGGATAGTTTAGAAGCAAATATTGTTCATCAAGTTGAAAAACCTCATGTTGGAATGATATTTAGTTCTAAAGATGAACTTACAAAGTATTACAAGAGATATGGTCAGTCTATGGGTTTTGGAGTTACTAAACGTACTAGCAAAAATGGAGAtgatggaaaaaaatattttactttagcATGTAGTCGTGGAACAAAGTATGTGAGCAAATCAAAGAATCTTTTGAAGCCAAATTCTATAACAAAAACTCAGTGTAAGGCTAGATTGAATGGATGCATTTGTTTAGATGGAACAGTTACGATTTCAAGAATTGTTCTTGAGCATAATCATGACCTAAGTCCCACTAAAGCACGCTATTTTAGAAGTAGTAAGAATTTGGAGCCTCATTTAAAAAGGAGGTTAAAACTCAACGATCAAGCTGGAATAAATGTAAGCAGAAATTTTCGATCTTTGGTTGTGGAAGCGGGTGGATATGAGAATTTGACATTTGGTGAAAAGGATTGTAGAAACTACATAGATAAAGTAAGGATATAA 1089 0.3627 MLLLVVSRGQKFQLWNQPRTKSVDLNLLLCRYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKMLLKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFISSASDRNQEECSTAADIVEMFQLQTRKMDVTTQVEEVVVSSDGEEINEENNTCEDSLEANIVHQVEKPHVGMIFSSKDELTKYYKRYGQSMGFGVTKRTSKNGDDGKKYFTLACSRGTKYVSKSKNLLKPNSITKTQCKARLNGCICLDGTVTISRIVLEHNHDLSPTKARYFRSSKNLEPHLKRRLKLNDQAGINVSRNFRSLVVEAGGYENLTFGEKDCRNYIDKVRI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02758 362 CDD OBF_DNA_ligase_I 32 154 - -
Tsu07g02758 362 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 32 181 - -
Tsu07g02758 362 PANTHER DNA LIGASE 3 32 181 - -
Tsu07g02758 362 Gene3D - 29 170 IPR012340 -
Tsu07g02758 362 Pfam ATP dependent DNA ligase C terminal region 32 137 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tsu07g02758 362 SUPERFAMILY Nucleic acid-binding proteins 32 156 IPR012340 -
Tsu07g02758 362 Pfam FAR1 DNA-binding domain 214 298 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02758 Tsu-Chr7 32376080 32380287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02758 32 156 Core DNA Replication Machinery Family AT1G08130 40.157 7.60e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu07g02758 DNA_ligase_A_C 7.5e-18 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02758 - - gmx:100807673 241.891