Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02748 ATGCCGCCGCGTGTTGCACCACCTGATCCTTCCATAGATCACTCATCTCCTTTCTATGTTCATCCTGGAGATGGACCTTCATCTGTTACCGTTTCACCTCTTCTCACAGGCTCGAATTATCACTCATGGTCTCGTGCGATGAAGCGAGCTCTTGGTGCAAAGATGAAGCTCGATTTCGTCGATGGTTCTCTTCCTCCACCGGCTGATGCTTTTGATCCCTCATTTCGTGCATGGAATCGATGCAATCAACTCGTTTCTTCTTGGCTCTTGAATTCCGTGTCTGAATCCATTGCTCAATCCGTCATCTTCTTGGAGAATGCTGTTGACATTTGGAATGATCTACGTGAGCGTTTCTCGCAAGGTGATTTGATTCGTATCTCTGAATTACAACGCGATATCTATGATTTGAAGCAAGAAAATCGCTCCGTTACTGAATTTTATTCTGAATTGAAGCTTCTTTGGGAAGAACTTGATCTATATCTTCCAATTCCAACGTGCACATGTCGTGTTCGATGTAATTGTGATGCTATGCGTGCTGCTCGTAAtaatcatcttcttctccatacAATTCGTTTTTTGACTGGTCTTAATGACAATTTCTCTGTTGTTAAGTCTCAAATTTTGCTCATGGATCCTCTTCCAACTATGAACAAGATCTCTATCAATGCTGCTAAGTTTGGAAAACCTTCTAGCTCCAAGTCTTCCTCTCGAGGTTGTTCTTACTGTGGCAAGGACAATCATGTGGTTGAAAACTGCTTCAAGAAGTATGGAGTACCTCCACACATGAAGAAGTCTTCATCTGTGAATGTTGTAGCTGAGGGGAGCAACACTGCTTCATCCACAACACCTGCTCCTTCAATCTCTCAAGATCAGTATGATAGGTTAATGTCAATCCTTCAGAATTCAAATCTTGGATCCAATACTACTGCAAGCTCAAATCAGGTTGGTTCATCCATGAATTCTGATCATACATCAGAAATTCACAAAGGTATAAACTCTTCTTCTTATGCTACATGTACTCTTAGCACTTGGATAATAGATTCTGGTGCTAGTCATCATATATGTAGTTCTTTAAGTTGGTTTCAATCATATATTGAAATCAATCCTATAAACATAAAATTGCCAAATGGAGCTTTTGCTATTGCAAAATACTCTGGAACTGACCAGAAGAATTTGAGGATGATTGGTTCAGCTGATGAACATGAAGGATTGTATCACTTGAATCTCACAGATAGAATTGCACATGTAGCTGCTATTGATGGCACAAATTTCCCTACCATACCCCCATCTGCTATTTGGCATTTCAGACTAGGACACCCTTCCCATAGTAGATTAGTTAGTTTGCAATCCAAGTTTCCTTATGTAACAATTGATCAACATGGAATTTGTGATATCTGTCACTTTGCTAGACATAAGAAACTTCCCTATAAAAGTAGTTTTAATAAAGCATTACATGCTTATGATCTAGATGTCAATAATGCTTTTCTACATGGTGAATTACAAGAGAATGTATATATGGTCATACCAGATGGTGTTTCTGTTTCTCAACCAAATCAAGTCTGTAAGCTCCTCAAAAGTCTCTATGGTTTAAAACAGGCTAGTAGAAAATGGTATGAGAAACTCACATCCTTGTTAGTTAAGGAGGGACACAAACAATCCACATCTGATTATTCACTTTTTACTCTCAATAATCAAGATAATTTCACTGCTCTCCTTATATATGTAGATGACATTGTTCTAACTGGGACATGCCTAAGTGAAATCAACAGGATCAAAACTATTCTAGACACAAACTTCAAAATCAAGGATTTGGGCATTGTGAAATATTTCCTTGGTCTAGAAGTAGCACACTCAAAAGAAGGTATTAGTGTATCTCAGAGAAAGTATTGCTTGGATTTACTTAATGATTCTGGTCTGCTTGGATCCAAACCAGCCTCCACTCCCTTGGATCCATCCATAAAGCTACATAATGATAATGGAAAACCTTTTGAGGATATTAGTCTATACAGAAGACTTGTTGGAAAATTGTTGTATCTGACAAACACAAGGCCAGACATAGCTTATGCCACACAGCAACTAAGCCAATTCCTTCATAATCCTACCATCACACATTACAAAGCAGCTTGTAGGGTTGTTAGATACTTGAAGCATAATCCAGGCAGAGGTCTCATGTTTCATAGAAACTTAGATATCCAaattattggatactctgatgctgactgggctggTTGCTTAGATACAAGAAGATCAACTTCAGGCTATTGCTTCTTTTTGGGATCATCATTGATCTCATGGAAAGCAAAGAAGCAATTGACCATATCAAAATCCTCTTCAGAAGCTGAGTACAGAGCTCTATCTTCTTCTACATGTGAGTTAATTTGGCTATTGTACCTTCTAAAGGACCTACAGATTGAGTGCACACAGCTACCAGTTATCTTTTGTGATAATCAAAGTGCCTTACATATTGCTTCAAATCCAGTCTTTCATGAGAGAACTAAGCACATTGAAATAGACTGCCACTTGGTCAGGGAAAAAGTTCAAGCAGGATTGCTAAGACTCTTGCCTATCTCCACACAGGACCAGCTTACTGATTGTCTCACAAAGGCTTTACCAACAGCCAAATTCAATCACTTCATAGCCAAGCTTGGATTGCTTGACATATATCAAGCATCAGCTTGTGGGAGGCTGTTAAACATCAAGATTGCTTCTTCACCAAGTAACAACCATGAGGAAGCTTCTCTAGCAAATGATGATCAAGTGAAGAGTgATTTATACAATATGCAAGAAGATCGGATGCCTAAAAAGGGAATGCTTTTTTATAACATCAATGATGCTTGGAAGTTTTGGATTGATTATGGGGGAAGAATTGGGTTTGGAGTGAGAAAACAATATACGCACCATAGCAAGGACGGCTCAGGCTTAGCTACTTTTTGTAGGTTCGTGTGTTGCAAAGAAGGCTTACGAAAACCGGACAAACGAGATTTTAAAACAATCAAGCCAAGACCAGAGACGAGAACTGGCTGTCAAGCAAGGATAGGTCTTAAGAATATGGGTGAAAATTGGATGGTTCATGATTTTGTGGCAGAACATAACCATATGTTACACACACAAGAAACAACTCATATGTTGTCATCTCAACGAAAAGTTTCAGAAATTCACTGCCAACAAATTGATTTAGCAGATGACGCTGGTCTTCAACAAAGGAGTTCATTTGATTTGATGAGTAAAGAAGTGGGTGGCAGAACCAACTTGGGATTTACACGCCTTGATCAAAAGAATTATCtcaaaaaaagaaggaaaagcaGTTTAGTAAATGGGGAAGCCGGATATCTATTGCAATACTTTCAAAAAATGTCGCTTGATAGTCCTTCTTTTTATCATGCgtatcaaatggatgtggaAGATCAAATTACTAATGTATTCTGGGCAAATGCGAGAATGCTCTTTGATTACGGATATTTTGGTGATGTGGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACATAGACCGCTAGCGGTGTTCTCGGGATTTAACCACCATCGAAAAGCGGTGATCTTTGGGGCTGCATTATTGTACGACGAAACTGCAGAGTCGTACAAGTGGCTTTTTGAGACGTTTCTAGAGGCACATAAGCAAAAAACGCCTCGAACAGTTTTTACTGATCAAGATCAAGCAATGGCAAAAGCACTTGTCCAGGTAATGCCAGGAGCTTATCATGGCCTGTGTACATGGCACTTCATGCAAAATTGTATCAAGCACTTAAGTTATTTAATGAAAGGCGAATCTCATTTTCTTAGTGACTTTAAGAAGTGCATGTATGGGTGTGATGATGAAAAACAATTTGAAGAAAGTTGGAGAACCCTTCTTGTAAACTACAATGTTGAGGAAGACCCGTGGTTGAGAAGAGCATATAGTTTGAAGGAGAAATGGGCTTCTTGTTATATGAATAAGGCTTTTACATTAGGAATGCGAAGCACCCAACTTAGTGAAAGTGTGAATGCAGACATCAAGAATTTTATGAATGTGGATTTGGATATAATCAAGTTTTTAAAACGCTTTGAGGACGTTGTAGAAGAAAAGAGATATAACGAATTGAGGTCTACAACTCCTCAAGCTTTTGAATCCGGCCTTGCGCTTCTACAACATTCTACAAGTGTGAATCAGACCAATACCAAATCCCGCTTCACAGCCGCGCTTTTGAAACAATCCTGCTATTCAACAACAGTACCTGTTATAAAGCAAAAACCAGAGCAGATATAA 4266 0.3805 MPPRVAPPDPSIDHSSPFYVHPGDGPSSVTVSPLLTGSNYHSWSRAMKRALGAKMKLDFVDGSLPPPADAFDPSFRAWNRCNQLVSSWLLNSVSESIAQSVIFLENAVDIWNDLRERFSQGDLIRISELQRDIYDLKQENRSVTEFYSELKLLWEELDLYLPIPTCTCRVRCNCDAMRAARNNHLLLHTIRFLTGLNDNFSVVKSQILLMDPLPTMNKISINAAKFGKPSSSKSSSRGCSYCGKDNHVVENCFKKYGVPPHMKKSSSVNVVAEGSNTASSTTPAPSISQDQYDRLMSILQNSNLGSNTTASSNQVGSSMNSDHTSEIHKGINSSSYATCTLSTWIIDSGASHHICSSLSWFQSYIEINPINIKLPNGAFAIAKYSGTDQKNLRMIGSADEHEGLYHLNLTDRIAHVAAIDGTNFPTIPPSAIWHFRLGHPSHSRLVSLQSKFPYVTIDQHGICDICHFARHKKLPYKSSFNKALHAYDLDVNNAFLHGELQENVYMVIPDGVSVSQPNQVCKLLKSLYGLKQASRKWYEKLTSLLVKEGHKQSTSDYSLFTLNNQDNFTALLIYVDDIVLTGTCLSEINRIKTILDTNFKIKDLGIVKYFLGLEVAHSKEGISVSQRKYCLDLLNDSGLLGSKPASTPLDPSIKLHNDNGKPFEDISLYRRLVGKLLYLTNTRPDIAYATQQLSQFLHNPTITHYKAACRVVRYLKHNPGRGLMFHRNLDIQIIGYSDADWAGCLDTRRSTSGYCFFLGSSLISWKAKKQLTISKSSSEAEYRALSSSTCELIWLLYLLKDLQIECTQLPVIFCDNQSALHIASNPVFHERTKHIEIDCHLVREKVQAGLLRLLPISTQDQLTDCLTKALPTAKFNHFIAKLGLLDIYQASACGRLLNIKIASSPSNNHEEASLANDDQVKSDLYNMQEDRMPKKGMLFYNINDAWKFWIDYGGRIGFGVRKQYTHHSKDGSGLATFCRFVCCKEGLRKPDKRDFKTIKPRPETRTGCQARIGLKNMGENWMVHDFVAEHNHMLHTQETTHMLSSQRKVSEIHCQQIDLADDAGLQQRSSFDLMSKEVGGRTNLGFTRLDQKNYLKKRRKSSLVNGEAGYLLQYFQKMSLDSPSFYHAYQMDVEDQITNVFWANARMLFDYGYFGDVVSLDSTYCTNSSHRPLAVFSGFNHHRKAVIFGAALLYDETAESYKWLFETFLEAHKQKTPRTVFTDQDQAMAKALVQVMPGAYHGLCTWHFMQNCIKHLSYLMKGESHFLSDFKKCMYGCDDEKQFEESWRTLLVNYNVEEDPWLRRAYSLKEKWASCYMNKAFTLGMRSTQLSESVNADIKNFMNVDLDIIKFLKRFEDVVEEKRYNELRSTTPQAFESGLALLQHSTSVNQTNTKSRFTAALLKQSCYSTTVPVIKQKPEQI 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02748 1421 Pfam Retrotransposon gag protein 86 158 IPR005162 -
Tsu07g02748 1421 SUPERFAMILY DNA/RNA polymerases 478 841 IPR043502 -
Tsu07g02748 1421 Pfam MULE transposase domain 1157 1251 IPR018289 -
Tsu07g02748 1421 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 921 1369 IPR031052 GO:0006355
Tsu07g02748 1421 CDD RNase_HI_RT_Ty1 734 872 - -
Tsu07g02748 1421 Pfam GAG-pre-integrase domain 403 471 IPR025724 -
Tsu07g02748 1421 Pfam FAR1 DNA-binding domain 947 1035 IPR004330 -
Tsu07g02748 1421 PANTHER OS03G0181600 PROTEIN 921 1369 - -
Tsu07g02748 1421 MobiDBLite consensus disorder prediction 307 326 - -
Tsu07g02748 1421 Pfam gag-polypeptide of LTR copia-type 21 68 IPR029472 -
Tsu07g02748 1421 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 486 649 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02748 Tsu-Chr7 32243026 32253389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02748 474 884 Receptor kinase-like Gene Family AT4G23160 46.062 3.22e-113 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu07g02748 RVT_2 6.4e-39 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02748 - - ccaj:109800533 707.212