Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02729 atgattGTGTTAGTGAATTCTAGTAGTACAGGTTTAAGGAAACAAGTTTTTCCAATTGATTACGAAACAGAAATGTCACAGCGTCTCGTAGATGCTGTTCATCACGGTGAAACAGATTTTGCGATTCAATGTTTATCGAATCCTTCGGTTGATGTTAACTTCATTGGAACAGTGTTGTTGAAATCTAAAACGACGGAGATTGTTCTTCAAGATGACTTACCTCACCGAGTGAACTCGGTTTATGAAGAGTTTAAAACTGATGTTACTGCTCTGTTTTTGGCTGCACATTCTGGAAATTTCATACTCCTTCGTAAACTATTgAATGCGGGAGCTAATGTAAATGTGAGATTGTTCCGAGGCTATGCTACAACAGCAGCGGTGAGGGAAGGACATTTGAAAGTATTGGAGGTTCTTATCAACGGTGGAGCGTCACAACTTGCATGTGAAGAAGCTTTACTTGAAGCAAGCTACGTAGGACGGGCCACATTTGCTGAACTACTGATGCAGTCCAACTTGATCCGTCCTCGGGTTGCAATCCATGCCTTTGTCTCTGCTTGTTGCAGAGGCTTCATTGAGGTTGTTGATGTACTCATCAAGCATGGAGTTGATGTCAATGCAATGGATAGGACTCTACTTCAATCTTCAAAGCCATTTCTTCACGCCAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGACAGATTAATGTTGTTAGACTATTGTTGCAGGTTGGTGTAAGACTTGATATCAAGGTGAAATTGGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTTCGAGTCGGTGTTGGACTAGCCGAGCCTTATCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGAACTATACTCCATATGCTTCTCCAACACCTCTCACCTAATAGTTTCCACATCGGACGAACTCTCTTGCACCACACCATTGTTTGTAACAACGAAAGAGCATTGAATATACTTCTCAATAATGGTGTGGATACAGAATTAGTACTTCAAACTACTGAAGAAACCAACGTACACCCTATTCACATGGCTGCGCGACTTGGATCCTGCAACATTCTTCAGTCTTTGATTGATGGTAAGTGCAACTTGGACTCTCAAACAAAATTTGGTGACACAGCATTGATGATTTGTACAAGGAATAAAAATGCGAAGTGTCTAAGAGTTTTAGTATCTTCGGGAGCTGATTTGGGGATTGTAAATTCGTCCGGTCAATGTGCAACTTCATTAGCAAATTTTGTTCAGTGGAGTAAAGAATATCAAAAAGCAATTTTGGATATCATTAGAGGCGGAAAGGTTGTTAAATCAAGCAATGCGTGTGGATTTTCAGCTTTATTATTCGCCACTAGCGCTAATGACATAGAGGCATTGAAAAAACtcattgaaaataaaaacataaatctAGATGAACAAAATGGGAATGGATTTTCAGCTGCAATGATAGCTTGTGCAGGGGGTAATGTGGAACCTTTCAAGTTGCTTCTTTATGCCGGAGCTGATGTAATGAATCTGAAAAACAAATATGGTTTAACAGCTCTTAATATCATTGATTCGAACCAAAAAGGCGAAAATGGCGAAAAATTCCACAAGGTGATGTTTGACTATGCACTTAAAAAAGGATGCAGTGTTATTACTTTAGCCGAGGCGAACCCTCTTCACCGTGCAGCTTGTTATGGAGACATAAACATTGTTGAAAAGTTATTAAAACAAGGGTATTATGATGTAAATGGTTTTGATGGAAATGGATATACACCATTGATGTTAGCAGCAAGAGAAAATAAAGGAGAAATGTGTGAGATTTTGATATCTTACGGAGCGAAATGCGATATTGAGAATGAAAAACATGAAACAGCACTTTTACTTGCAAGAAAAAATGGGAAAGGAAATGATGCAGAGAATGTGATATTAGATGAGTTAGCTAGAAGAGTAGTGTTGTGTGGTGCAAGTGTGAAGAAACATACAAAATGTGGTAAAGGGTTACCACATAGGAAACAATTGGTAATGGTTGGTGGTGCTGGAATCTTACGTTGGGGGAAATCAAATAAGAGAAATGTTGTTTGTAAAGTGGCTGAGGTTGGACCGAGCGAAAAATTTCGATGGAACCGTAGGAAGaagtttgatgttgatgaacAAGGAATGTTTTATGTTGTTACTGCTAAAAATAAAGAGGTGCATTTTGTTTGTGAAGGTGGAGTTGAAATGGCTGAGTTATGGGTTAGAGGGATTAGATTAGTAACAAGAGAAGCTATTTTTGGTTCTAAAGCTAATACTTGTTAA 2307 0.3836 MIVLVNSSSTGLRKQVFPIDYETEMSQRLVDAVHHGETDFAIQCLSNPSVDVNFIGTVLLKSKTTEIVLQDDLPHRVNSVYEEFKTDVTALFLAAHSGNFILLRKLLNAGANVNVRLFRGYATTAAVREGHLKVLEVLINGGASQLACEEALLEASYVGRATFAELLMQSNLIRPRVAIHAFVSACCRGFIEVVDVLIKHGVDVNAMDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPYPITWCAVEYFESTGTILHMLLQHLSPNSFHIGRTLLHHTIVCNNERALNILLNNGVDTELVLQTTEETNVHPIHMAARLGSCNILQSLIDGKCNLDSQTKFGDTALMICTRNKNAKCLRVLVSSGADLGIVNSSGQCATSLANFVQWSKEYQKAILDIIRGGKVVKSSNACGFSALLFATSANDIEALKKLIENKNINLDEQNGNGFSAAMIACAGGNVEPFKLLLYAGADVMNLKNKYGLTALNIIDSNQKGENGEKFHKVMFDYALKKGCSVITLAEANPLHRAACYGDINIVEKLLKQGYYDVNGFDGNGYTPLMLAARENKGEMCEILISYGAKCDIENEKHETALLLARKNGKGNDAENVILDELARRVVLCGASVKKHTKCGKGLPHRKQLVMVGGAGILRWGKSNKRNVVCKVAEVGPSEKFRWNRRKKFDVDEQGMFYVVTAKNKEVHFVCEGGVEMAELWVRGIRLVTREAIFGSKANTC 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02729 768 Gene3D - 18 173 IPR036770 -
Tsu07g02729 768 SMART ANK_2a 484 513 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 223 252 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 118 147 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 177 206 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 450 478 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 557 587 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 347 376 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 380 409 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 310 339 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 591 620 IPR002110 GO:0005515
Tsu07g02729 768 SMART ANK_2a 86 115 IPR002110 GO:0005515
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat region circular profile. 591 623 - -
Tsu07g02729 768 SUPERFAMILY PH domain-like 652 755 - -
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Tsu07g02729 768 SUPERFAMILY Ankyrin repeat 310 644 IPR036770 -
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat profile. 380 412 IPR002110 GO:0005515
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat profile. 484 516 IPR002110 GO:0005515
Tsu07g02729 768 Pfam Ankyrin repeats (3 copies) 349 409 IPR002110 GO:0005515
Tsu07g02729 768 Pfam Ankyrin repeats (3 copies) 542 621 IPR002110 GO:0005515
Tsu07g02729 768 Gene3D - 279 427 IPR036770 -
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat region circular profile. 86 116 - -
Tsu07g02729 768 Pfam Ankyrin repeats (many copies) 454 505 IPR002110 GO:0005515
Tsu07g02729 768 Gene3D - 174 262 IPR036770 -
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat profile. 557 581 IPR002110 GO:0005515
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Tsu07g02729 768 SUPERFAMILY Ankyrin repeat 29 257 IPR036770 -
Tsu07g02729 768 Gene3D - 428 530 IPR036770 -
Tsu07g02729 768 PANTHER ANKYRIN REPEAT-CONTAINING 10 763 - -
Tsu07g02729 768 Coils Coil 461 484 - -
Tsu07g02729 768 Gene3D - 531 671 IPR036770 -
Tsu07g02729 768 ProSiteProfiles Ankyrin repeat region circular profile. 557 581 - -
Tsu07g02729 768 PANTHER ANKYRIN DOMAIN PROTEIN 10 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02729 Tsu-Chr7 31965652 31970246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02729 354 539 Ion Channels AT2G25600 27.957 9.59e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02729 - - mtr:MTR_3g085630 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02729 07 31965652 31970246 Tsu07g02729 07 31965652 31970246 ECH