Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02727 ATGATGGATGCTTCCGAGGTCGAGGAAAGTTTCTTTGCAGCAAGTGATGCCAAGTTACATACAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAATATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCCTTAGAGAAGGCGAAGAACGTACTTCAGCACTGCACAGAGTCTAGTAAACTTTACTTGGCTATAACCGGAGATTCCATTCTTCTAAAATTTGAGAAGGCGAAGTGTGGTATTGTAGATAGTCTTAAGCTGGTAGAAGATATCGTTTCCCAATCAATTGCATGTCAGATTGATGAAATTGTGAACGAAGTTTCTGGTATGGTGTTTGCGCTTGATCCATCAGAAAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTGAACAACTCTAATGACAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACGTCTTCCAGAGCAGCTCTCACCGAAAGAAGAGCTCTAAAAAAACTCATTGAAAGGGCTCGGGCCGAGGAAGACAAGAGGAAGGAATCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGACTTCTCTGACGATAATGATTCTCAAGGTTCTCAACCTTGTTCTCCCACCGTTCAGAGACCCCTCGAGGATGGTGTTTCTGCTGGTCATTGTCAAGCCTTTGATAGACAGATGTCAAAACTTAGTTCCTTTAATATTAAGCCGAACAATAAGAAGTCGGGACAAATGCCCCTTCCACCAGAAGAATTAAGGTGTCCAATCTCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGACAGACATATGAAAGAGCTTGTATAGAAAAATGGTTCAATGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTCACACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGTCCTCCCGAATCTCTTGATTTTAATTACTGGAGATTGgcattatcagattctgaatccACAAATTCAAGATCTGTGAACAGTGTCAACTCTTGCAAAATGAAGGGTGTCAAAGTTGTTCCTCTTGAAGAGAATGTTATCTTAGAGAAAACTGAGGGAAATGTAACTGAAACTTTGTCTACACAAGAAGAGGAAGATAGTGAGCAGTATCTTAGTTTTCTGAAAGTATTGACTGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTAGTAGAGCGGTTGAGGTTGTTGCTGCGGGACGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTCCTGCAAACAGCTGTGCGTGAAGGGAATGTGAAGGCTCGGGAAAATGGAACTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCTGGAATCTTATCGTTGTTGGAGGAAATGGTAATGATTTCAACCTCCAGTTCATACAGTTGTGCAACTGCCCTGTATCTGAATCTTTCTTGCCTCGAAGAAGCCAAGCAAGTGATTGGCGCGAGTCAAGCTGTGCAGTTCCTAATTCAGATGCTTCAACCTAAGACAGAAGTCCAGTGCAAGATGGATGCCCTTCATGCACTCTATAATATTTCTACTGTGTCCTCGAATATTTCAAACCTTATTTCTTCTGGCATCATCAATGGCCTACAATCCCTTCTTGTAGGCCAAACTGGTTGCATGTGGTCAGAAAAATGCATAGCTGTTTTGGTTAATTTGGCGGTTTCTCAGGTAGGAAGAGAGGAAATGATCTCGAATCCTGAACTGATAACCACGTTGGCTTCTATACTCGATACCGGTGAATCCATAGAGCAGGAACAAGCTGTGTCTTGTCTCCTAATATTATGTAACAGGAGTGAGAAATGTTGTGAGACGGTCTTGCAAGAAGGGGCTATACCTGCATTGGTGTCGATATCGGTAAATGGAACCTCAAGAGGAAGAGAGAAAGCTCAAAAGCTGTTGATGCTCTTTCGAGAGCAGCGACAGCGAGACCATTCACCTTCTAAGACTCAATGCTCACCTGAAGCTAGTGATTTGTCCATGCCTCAAGAAGGGAAACCGCTAAGTAAATCAATATCTAGAAGAAGAGTGGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTCTACCAGTGCTAG 2301 0.4129 MMDASEVEESFFAASDAKLHTEMCRSLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCTESSKLYLAITGDSILLKFEKAKCGIVDSLKLVEDIVSQSIACQIDEIVNEVSGMVFALDPSEKQVGDDLIALLQQDRKLNNSNDSSELECFHMAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSDFSDDNDSQGSQPCSPTVQRPLEDGVSAGHCQAFDRQMSKLSSFNIKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLTHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKMKGVKVVPLEENVILEKTEGNVTETLSTQEEEDSEQYLSFLKVLTEGNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALFQFLQTAVREGNVKARENGTMALFNLAVNNNRNKELMISAGILSLLEEMVMISTSSSYSCATALYLNLSCLEEAKQVIGASQAVQFLIQMLQPKTEVQCKMDALHALYNISTVSSNISNLISSGIINGLQSLLVGQTGCMWSEKCIAVLVNLAVSQVGREEMISNPELITTLASILDTGESIEQEQAVSCLLILCNRSEKCCETVLQEGAIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPSKTQCSPEASDLSMPQEGKPLSKSISRRRVGKALSFLWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02727 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Tsu07g02727 766 SUPERFAMILY ARM repeat 429 707 IPR016024 -
Tsu07g02727 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Tsu07g02727 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Tsu07g02727 766 Gene3D - 403 723 IPR011989 -
Tsu07g02727 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Tsu07g02727 766 SMART arm_5 543 584 IPR000225 GO:0005515
Tsu07g02727 766 SMART arm_5 502 542 IPR000225 GO:0005515
Tsu07g02727 766 SMART arm_5 456 500 IPR000225 GO:0005515
Tsu07g02727 766 MobiDBLite consensus disorder prediction 711 743 - -
Tsu07g02727 766 CDD RING-Ubox_PUB 284 326 IPR045210 -
Tsu07g02727 766 Coils Coil 176 196 - -
Tsu07g02727 766 PANTHER U BOX DOMAIN-CONTAINING 2 738 - -
Tsu07g02727 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 738 - -
Tsu07g02727 766 SUPERFAMILY RING/U-box 278 355 - -
Tsu07g02727 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Tsu07g02727 766 MobiDBLite consensus disorder prediction 225 239 - -
Tsu07g02727 766 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02727 Tsu-Chr7 31928329 31933590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02727 2 765 U-box Gene Family AT1G24330 64.789 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02727 - - gmx:100804344 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02727 07 31928329 31933590 Tsu07g02727 07 31928329 31933590 ECH
Tsu07g02727 07 31928329 31933590 Tsu02g01212 02 10243697 10248975 PCT