Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02687 ATGGAGTGGAACGCGAAATCTCCCGGGCAGTGGGACTGGGAAAACttattcttcttgaattcaaaGGCAACAGAAAATCACAAGTTACAGTCTACCGATTGGAGTGCGGAGACAGACCGAGAAATCAATGTCGGGGTATTGCTTCCATCAGGTGGTAATGGTTATTCCATGTCGAAACTAGCACATGCTTCATCCTTGAGGAGTTCAAAATCTCCTTCCAATAATTCATCATCAAATGGAGACAGCAAGACATCAATGTTAACTCAAGAAGGTTCTCAAGACGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCGGCAGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTGCCCTGAAACTCATTCCAAGAAAGCCTCTTCCTCTGCGGTTCCGCTTTCATGCAAAAAGAAAGGTAAATCGAAAAGTCAGAACTTGCCACATCCAAGCTGTCAGGTGCAAGGCTGTGGCCTTGACCTCTCTTCTGCTAAAGAGTACCATCGAAAACATCGTGTTTGTGAAAGTCATGCCAAATCACCTATGGTGGTTATAGCTGGTTTAGAGCTTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCCGTCAGagtttgatgataaaaaaagaagctGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTGCAACTGAATCCATCAGCTCTGCATTCTTCACCCTATGATCGGAGGCAAATAATGGGCTCGTTCGATTTTTCAAGGAATGCTTCAAATTTAGCATGGCAAGGCTTACAAAGTAGCAAGCTCCCTCAAACAAAAGATTTTATGCTCAAACCTCCAAAAGCCTTCAACAAGATTGTCACTACTATGCTTTCTGATGATTCCAGTGGCCACCTTGCATCCAAAGGCGCAGGATCCAAGAGTACATTTCCAGGTATAGAAGATCAAGCTACTTTGTCTGATCCGAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATTGGGTACATACGATACCAAGTCCCTCTCCCTCGAACACTCCAACCGAATAACCGGAACCACTCAGTCTATAACACATGCAATTGCTCAGCGCGCTCCATTTCCGTCATCCGAATACTGGCACACTGATCAGCAAAACGCCAACTCCACCAGCACCTGTATCTCGTTCTCAGGTTACGACAATACCAGTCGCTTTCAAGACTTTCAGCTTTTCAGTGCACCCTTTGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA 1320 0.4402 MEWNAKSPGQWDWENLFFLNSKATENHKLQSTDWSAETDREINVGVLLPSGGNGYSMSKLAHASSLRSSKSPSNNSSSNGDSKTSMLTQEGSQDDSTGKKELSKGDPIETSPAAEPLLTLKLGKRFYFEDVCPETHSKKASSSAVPLSCKKKGKSKSQNLPHPSCQVQGCGLDLSSAKEYHRKHRVCESHAKSPMVVIAGLELRFCQQCSRFHAPSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNPSALHSSPYDRRQIMGSFDFSRNASNLAWQGLQSSKLPQTKDFMLKPPKAFNKIVTTMLSDDSSGHLASKGAGSKSTFPGIEDQATLSDPNATQDVNRALSLLSTNSLGTYDTKSLSLEHSNRITGTTQSITHAIAQRAPFPSSEYWHTDQQNANSTSTCISFSGYDNTSRFQDFQLFSAPFESSFPCNQLD 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02687 439 Pfam SBP domain 165 238 IPR004333 GO:0003677
Tsu07g02687 439 Gene3D - 161 226 IPR036893 GO:0003677|GO:0005634
Tsu07g02687 439 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 438 - -
Tsu07g02687 439 MobiDBLite consensus disorder prediction 221 255 - -
Tsu07g02687 439 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Tsu07g02687 439 MobiDBLite consensus disorder prediction 61 93 - -
Tsu07g02687 439 MobiDBLite consensus disorder prediction 142 161 - -
Tsu07g02687 439 MobiDBLite consensus disorder prediction 309 329 - -
Tsu07g02687 439 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 438 IPR044817 GO:0003677
Tsu07g02687 439 MobiDBLite consensus disorder prediction 61 115 - -
Tsu07g02687 439 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02687 Tsu-Chr7 31464802 31468331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02687 1 354 SBP-box Gene Family AT5G43270 39.572 2.22e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu07g02687 SBP 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02687 - - gmx:100781289 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02687 07 31464802 31468331 Tsu07g02687 07 31464802 31468331 ECH