Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02681 ATGCTACCTGGTTTGCATTACAATATCAATGATCTCTTTCAAGAAGCTAAGAAAAGATGGCTCAAACCTATAGAAGTGTTTTACATTTTGCAGAAGCACGACATGTGCGAGTTCACTGATATGCCCCTTAACCGGCCTCGTGGTGGAtctgtttatttgtttaataaaagAGTCATGCGTTTCTTTCGAAAAGATGGTCATAATTGGCGGAAGAAAAAAGATGGAAGAACTGTGGCAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGAGGCGAAGCTATTGGATGTTGAACCCGGAATATGAGCATGTTGTTCTCGTGCATTACAGAGATACAAATGAGGGGACATCAAATTCTGGACCTGCCACACAATTGTCACCGTTTAGTCAGAGTCGCAGCTCATATACTAATCAAAACCCCGAGACTACATCCATAGTAGGTGATTCATGTGAACTTAATCAGAATTTCTCCAGTCCCGGGTCCTTGGAAGTCACCTCCGATACAGTCATCATGAATAATGGAACGGATCACTTGGAGAAAACAAATGCACAAGTTTTCCGCCAATTGGAGGAACAGTTAAGTTTGAATGACGACAGCTTCACAGAAACTTCTCCGTTTTATAGGGAACATGAAGTCCCACATGAAATATGTGCTGCATTCTCCGGACCTGATGATCATAAACAACCATGTGATGGATATAATGGAACAAAAGATGGCAGCTGTAATCATTATCATGAGTTAATTGACCATAGTTACCCTGGTGGGAATGAGAAAACATTATCTTGGACAGAAATGCTGGAATCAAGCAAGTTATCATCTGTGATCAAGTTACCAGAACAACATGCATACAAGGCATTTGAAAATGAAAAACCATTATCTTTTCCAGGAAGAGAAATGATTGCCAACCAGAAAATCGGTTACTGGCTACACcccaacaataataatgatgtGAATTCTGTCTTTTCATTAAGTCAACATATTAGTGGAGTCAACATGTCTCCATATTCTTCGGTAGAAACTCAAGGAACTAATTCTGACTACTATGAAAGATTATTTGACCAAAGCCAAAGTCAAGAAACTCTGGATGCATATTCAAGGTTGACCGTTGGACCGAAATTTACAATTACGGCTGTCTCCCCAGAATACTGTTATGCCACTGAGGCAACAAAGGTGATCATTGTTGGATCTTTTCTCTGCCTCCCCATGGATTCTACCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAAATACTTCAGGATGGCGTAATCTGTTGCGAGGCTCCATCCCATCTTGTTGGAAAGGTTTCTCTGTGCATTACTTCAGGAAATAAGGAGCCATGCAGTGAAGTCAAAGAGTTTGAATTTCGTAATAAGACCAATAATTGCACTCACTGTAATAGTTTGGAAACAGAAGCTGCCCGAAGTCCAGAAGAGCTGTTATTACTTGTTCAATTTGCAGAAATGCTCCTTTCTACTTCAATTATAAAAGATGATAGCACAGAATCTGGAAGCCATCTTTCAACGGAACAGAAAGCAGATGATGATTCATGGAGCCATATTATAGACGCTCTCCTAGTTGGCAACGGAACTTCATCTGGTACTATTGATTGGATTCTTCAAGAGCTGCTGAAGGATAAGCTGCAGCACTGGCTTTCTTGCAGATCCAATGAACGAGATGAAGGGGCAGGTTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATACACATCGTTTCTGTATTGGGTTTCGAGTGGGCCCTGAACCCTATTCTCAGTTGTGGCGTGAATGTTAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCATCGCTTATTGCTGCTGGTGCATTTGCTGGAGCAGTGACAGATCCAACTTCGCAAGATCCAAATGGTAAAACTGCTGCAACTATTGCGACCAGCAATGGTCACAAGGGACTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGTTCCTAAAGATTCTTCTGAGCTTGAAGCTGAGTTAACTGTCAGCAGTGTGTCTAAGAAAAATCTCGAAGCCAATGATGATGAGGTTTCACTAAAGAATACCTTGGGTGCTGTCAGAAATGCATCTCAGGCAGCTGCACGGATACAGGCTGCTTTTCGTGCACGTTCTTTCAAAAAACGGATGGAGAGAGAAGCTGCCTCTGCCACTTGTCTAAATGGATATGTCAATGGTGTAGGTAGCATTGGTGGATATGCTAGGAGCTTGCGTGATTGCAATTCAGCTGCCTTATCAATTCAGAAGAAGTATCGGGGTTGGAAACGTCGCAAAGAGTTCTTAGCTTTGCGCCAAAAAGTTGTAAAGATACAGGCTTTGGTGCGGGTGCGTTCCATGGTCCATTCTACGCATGCTCGTCAACAATATAATCGCTTGCTTGAGATGTATCGTCAAGCCAAGGCTGAAACACTTTTATCAACTTCTTTAGAGAATGCTTGGAATactgaagaagatgaaacacTTTTAGCAACTTCTTTAGAGAATGCTTGGAAAGAGAATGCTTCGAatattgaagaagatgatgatttatttcaatttccatggGAAACACTCTAG 2703 0.4088 MLPGLHYNINDLFQEAKKRWLKPIEVFYILQKHDMCEFTDMPLNRPRGGSVYLFNKRVMRFFRKDGHNWRKKKDGRTVAEAHERLKVGNVEALNCYYAHGEENRSFQRRSYWMLNPEYEHVVLVHYRDTNEGTSNSGPATQLSPFSQSRSSYTNQNPETTSIVGDSCELNQNFSSPGSLEVTSDTVIMNNGTDHLEKTNAQVFRQLEEQLSLNDDSFTETSPFYREHEVPHEICAAFSGPDDHKQPCDGYNGTKDGSCNHYHELIDHSYPGGNEKTLSWTEMLESSKLSSVIKLPEQHAYKAFENEKPLSFPGREMIANQKIGYWLHPNNNNDVNSVFSLSQHISGVNMSPYSSVETQGTNSDYYERLFDQSQSQETLDAYSRLTVGPKFTITAVSPEYCYATEATKVIIVGSFLCLPMDSTWACMFGDVEVPAEILQDGVICCEAPSHLVGKVSLCITSGNKEPCSEVKEFEFRNKTNNCTHCNSLETEAARSPEELLLLVQFAEMLLSTSIIKDDSTESGSHLSTEQKADDDSWSHIIDALLVGNGTSSGTIDWILQELLKDKLQHWLSCRSNERDEGAGCSLSKKEQGIIHIVSVLGFEWALNPILSCGVNVNFRDINGWTALHWAARFGREKMVASLIAAGAFAGAVTDPTSQDPNGKTAATIATSNGHKGLAGYLAEADLTSHLSSLTLEKCEVPKDSSELEAELTVSSVSKKNLEANDDEVSLKNTLGAVRNASQAAARIQAAFRARSFKKRMEREAASATCLNGYVNGVGSIGGYARSLRDCNSAALSIQKKYRGWKRRKEFLALRQKVVKIQALVRVRSMVHSTHARQQYNRLLEMYRQAKAETLLSTSLENAWNTEEDETLLATSLENAWKENASNIEEDDDLFQFPWETL 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02681 900 ProSiteProfiles Ankyrin repeat profile. 621 653 IPR002110 GO:0005515
Tsu07g02681 900 PANTHER CALMODULIN-BINDING PROTEIN 821 897 - -
Tsu07g02681 900 Gene3D - 558 691 IPR036770 -
Tsu07g02681 900 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Tsu07g02681 900 Gene3D Immunoglobulins 386 479 IPR013783 -
Tsu07g02681 900 Pfam Ankyrin repeats (3 copies) 605 685 IPR002110 GO:0005515
Tsu07g02681 900 ProSiteProfiles Ankyrin repeat region circular profile. 621 646 - -
Tsu07g02681 900 Gene3D - 789 850 - -
Tsu07g02681 900 PANTHER CALMODULIN-BINDING PROTEIN 1 824 - -
Tsu07g02681 900 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 824 - -
Tsu07g02681 900 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 821 897 - -
Tsu07g02681 900 SUPERFAMILY E set domains 391 475 IPR014756 -
Tsu07g02681 900 Pfam IPT/TIG domain 391 467 IPR002909 -
Tsu07g02681 900 SUPERFAMILY Ankyrin repeat 590 683 IPR036770 -
Tsu07g02681 900 SMART CG_1_2 12 130 IPR005559 GO:0003677
Tsu07g02681 900 ProSiteProfiles IQ motif profile. 790 818 IPR000048 GO:0005515
Tsu07g02681 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 739 829 IPR027417 -
Tsu07g02681 900 MobiDBLite consensus disorder prediction 129 160 - -
Tsu07g02681 900 SMART ANK_2a 621 653 IPR002110 GO:0005515
Tsu07g02681 900 SMART ANK_2a 660 689 IPR002110 GO:0005515
Tsu07g02681 900 CDD IPT 391 475 - -
Tsu07g02681 900 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Tsu07g02681 900 ProSiteProfiles IQ motif profile. 739 767 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02681 Tsu-Chr7 31335282 31345850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02681 5 824 CAMTA Transcription Factor Family AT1G67310 47.181 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tsu07g02681 CG-1 6.4e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02681 K21596 - gmx:100791430 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02681 07 31335282 31345850 Tsu07g02681 07 31335282 31345850 ECH
Tsu07g02681 07 31335282 31345850 Tsu02g01192 02 9981470 9989515 PCT