Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02676 ATGGATAATGGTTGCTTTTCTTCGCCTCGCCGCGATTTTCCTAATGGTTTAAGAGttcttgttgttgatgatgatccAACATGGCTTAAGATCCTTGAAAAGATGCTTAAAAAGTGTAATTATGAAGTGACGACGTGTTGCTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCGGACATGGACGGTTTCAAACTTCTTGAGCACGTTGGACTTGAAATGGATCTTCCTGTCATTATGATGTCGGTGGATGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAACCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTATTCAGAAAAAGGATACATGAGGTTAGAGACTTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAACTGTCCGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAacgaagaaaagaaaagatttaGATAACAAACACGACGACAAAGAATTTCTCGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCGGTGAATCAGATTGGTTTTGATAAAGTTGGTCCGAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGATAGCGAACAAAAATCTTCCCCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTTGGAAATTTCAATTTTCCGAACTCAGCAAACAAGCAACAAAACGATGCTTCAATTGACCGATGCAACTATTCAGAAGGAACCTTACAGCATCAGAACATGGAAACTAAAAGTCGTGAAGGTAATCCGAAAGGAATTGTTCCACATTCCACCACTGCAGAAAAGGCAAGACCTTTGACTGGTAACATCACTGATGCAAATATTCAACCTTTTGCTCCACTCGAATCAGAACGAAAACGTGCAGCATTTGATTGCACCATGTCAACACCGTATTCTTGGACTGAAATTCCAAAAACACAGCtcaaaaaagaacaaaagccAGTTGTTCATCTAGAGGACAACTTTAACTTGTTGCCTTTCCATGGTAAGAAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCAACTCCCTCTATATCAGAGAAAGATGTCGCTGCTTGTATAGAAACCAAACCTAGGTTTGCTGATTACAAGAAAGACTACACTAGTTCGGTGAGTTCAATAAGAAGTTCAGTTGACACCTTTCCTTTCCAACCGGGAAGCCTTATTATGATGAATGATCAACCTTCACAACCCATTTCAACTACTAATTTCGGCTTAAAAACACAGTCATCTAATAATCTCAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTCGGAGGTGAGGCTGCTTCTGCAGCACCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAGCCGAATATAGGAATGCCTGAGTATTATGATCCAGGGCTTCTCACAGAAGTTCCAAATCACTTATATGATTCAGCAGATTATTTAGTAATTGATCAAGGTCTATTCATAGCATGA 1710 0.3807 MDNGCFSSPRRDFPNGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVRDFENFESFESMHLMRNGSELSEEGNLFALEDMTSTKKRKDLDNKHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDSEQKSSPSGMKHSDLPSKDVGNFNFPNSANKQQNDASIDRCNYSEGTLQHQNMETKSREGNPKGIVPHSTTAEKARPLTGNITDANIQPFAPLESERKRAAFDCTMSTPYSWTEIPKTQLKKEQKPVVHLEDNFNLLPFHGKKHNIQVDQSQSIASISSTPSISEKDVAACIETKPRFADYKKDYTSSVSSIRSSVDTFPFQPGSLIMMNDQPSQPISTTNFGLKTQSSNNLSCISDLESYQRNLLFGGEAASAAPLDEDLYFYWHNMNFGQPNIGMPEYYDPGLLTEVPNHLYDSADYLVIDQGLFIA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02676 569 CDD REC_typeB_ARR-like 19 133 - -
Tsu07g02676 569 MobiDBLite consensus disorder prediction 258 297 - -
Tsu07g02676 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 544 - -
Tsu07g02676 569 Gene3D - 17 197 - -
Tsu07g02676 569 SMART REC_2 17 129 IPR001789 GO:0000160
Tsu07g02676 569 MobiDBLite consensus disorder prediction 280 297 - -
Tsu07g02676 569 SUPERFAMILY CheY-like 15 141 IPR011006 -
Tsu07g02676 569 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Tsu07g02676 569 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Tsu07g02676 569 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Tsu07g02676 569 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Tsu07g02676 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 544 IPR045279 GO:0009736
Tsu07g02676 569 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Tsu07g02676 569 Gene3D - 198 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02676 Tsu-Chr7 31219005 31222810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02676 13 265 Response Regulator Gene Family AT2G25180 56.641 6.66e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu07g02676 Response_reg 2.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02676 - K14491 gmx:100797421 880.937