Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02645 atgaatatgatgatgatgttcaCCAACACAACCACTCTTATTCCTTCTTTTAACTCAACAATTCACAGAACAACCCATCTTGGTCTCTGTCAACAACTACATCTCTCACGAAGAAACAACCATGTCTCTCTTGTTGTATCTTCAACTCAAACCACAGCATTTATGGAAACTATTCCATGGGGTTGTGAGAATGATTCACTTGAAAGTTCATCTTCTCTTGAGAAATGGCTTTCAGAGTCAGGTCTTCCATCTCAGAAAATGGCCATTGATAAAGTTGATGTGGGAGAGAGAGGACTTGTTGCTTTGAACAATATTAGAAAAGGAGAGAAACTTCTCTTCGTTCCTCCTTCACTTGTCATCACTCCTGATTCTGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGCCTCATGAAATCTTCAAGATGGTTCAGTTATATATCAGCCTTACCTCGTCAACCTTACTCACTTCTTTACTGGTCACAAGCCGAACTAGATCGCTACTTGGAAGCTTCGCAGATTCGGGAGAGAGCAATTGAAAGGACTGATAATGTTATTGGAACATACAATGATATGAGGGCCAGAATATTTTCCAAGTACCCCGATTTCTTCCCTGAAGAGGTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGCATTCTTTTTTCCCGCATGGTTCGGTTACCCTCAATGAATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAGGTGGAGACATTTTTGGATTATGATAAATCGACAAAGGGAATTGTCTTTACGACCGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATatggaaaaaaatcaaatggggAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACAAATCCAAGCGATTCAGTTGAGCTGTCACTGTCACTCAAGAAATCCGATGAGTCCTATACGGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATCAGGATCTCAGTGTTTTCCATTAAGGGTTACTGGTTGGCCATTGGAGTTAATGGCCTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGGTACGCCACTTATTATCTTTGTGA 1185 0.3992 MNMMMMFTNTTTLIPSFNSTIHRTTHLGLCQQLHLSRRNNHVSLVVSSTQTTAFMETIPWGCENDSLESSSSLEKWLSESGLPSQKMAIDKVDVGERGLVALNNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLMKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTDNVIGTYNDMRARIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMNGKVALVPWADMLNHSCEVETFLDYDKSTKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYTEKLELLKKYGLSGSQCFPLRVTGWPLELMAYAYLAVSPSSMRGKFEEVRHLLSL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02645 394 ProSiteProfiles SET domain profile. 65 301 IPR001214 GO:0005515
Tsu07g02645 394 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 15 295 - -
Tsu07g02645 394 Gene3D - 320 391 IPR036464 -
Tsu07g02645 394 Pfam SET domain 97 301 IPR001214 GO:0005515
Tsu07g02645 394 SUPERFAMILY SET domain 71 318 IPR046341 -
Tsu07g02645 394 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 331 378 IPR036464 -
Tsu07g02645 394 SMART set_7 85 307 IPR001214 GO:0005515
Tsu07g02645 394 CDD SET_RBCMT 80 315 IPR044431 GO:0016279|GO:0018022
Tsu07g02645 394 Gene3D set domain protein methyltransferase, domain 1 29 314 - -
Tsu07g02645 394 PANTHER - 15 295 - -
Tsu07g02645 394 Pfam Rubisco LSMT substrate-binding 334 385 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02645 Tsu-Chr7 30829763 30833029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02645 72 270 NAC Transcription Factor Family AT3G56570 23.039 1.31e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu07g02645 SET 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02645 - - cam:101500121 652.899