Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02638 ATGGGTTACATATGTGATTTTTGTGGAGACCAAAGGTCCATGGTGTACTGTCGTTCCGATGCAGCATGTTTATGTTTATCGTGTGATCGAAATGTTCATTCAGCGAATACGCTTGCTCGAAGGCATTCAAGGACACTTTTATGTGAGAGATGCAGTTCACAACCAGCTTTGGTTAGGTGTTCTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAATAACTCTACATCTTCCAATCATAAGAGGCAAACAATCAATTGTTACTCCGGTTGTCCTTCGTCGTCCGAACTTTCTTCAATATGGTCTTTTGTGTTAGATATCCCTTCTCTGAGTGAAACTACATGTGAGCAAGAACTAGGTTTCATGAGTATTAATGAGAATAGGAGTGCTTGGGTCGATCCGAAAAACCAGAATGTGTCTGATTCAGATAAAGCTACTGATTTACCTGATTCGGATAAGTCTTTTGTTGGTACATCTTCAATGCCAGAATCAAGCAAAGAACCGCGTATGCTCAACCGCCCAGATGGACCTACCAATGAATGTGTGCCAAAGTTATACTGTCCTGCTACCAAATGCCCTGAAgcaagtgaagatgatgatgatctgTATGGCGATTTCGATATGGATGAAATGGATATAAATATTGAGAACTATGATGAACTTTTTGGCATGGCCCTCACTCATTCCGAAGAGCTTTTTGAAAATGGTGGATTTAACAGCTTATTTGGAGCAAAGGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTATTGCAGCCGAGGGTTCATCAATTGGACATGTCAATCCAGCACAACCAGCATGCAGCACTGCTGCATCTGCAGATTCCATATTGAGTACAAAAACTGAACCGAATCTTTGTATTACGGCAAAACAATCCCAATCAAGCCTTTCTTTTTCTGGTATTAATGAAGACGGAGGTGCTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCCGAAAATGAGCTACAACTACAATCTGCTAATCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAGAAGACTCGCAAGTTCGACAAAAGAGTGAGGTATGCCTCTCGCAAGGAAAGGGCTGATGTCAGAAGGCGCGTGAAAGGCCGGTTTGTCAAAGCTGGCGAGGCCTACGATTATGACCCTTTGAGCCAAACCAGAAGCTATTGA 1239 0.4157 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGNNSTSSNHKRQTINCYSGCPSSSELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNVSDSDKATDLPDSDKSFVGTSSMPESSKEPRMLNRPDGPTNECVPKLYCPATKCPEASEDDDDLYGDFDMDEMDINIENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDAIAAEGSSIGHVNPAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02638 412 CDD Bbox1_BBX-like 4 47 - -
Tsu07g02638 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Tsu07g02638 412 MobiDBLite consensus disorder prediction 157 171 - -
Tsu07g02638 412 MobiDBLite consensus disorder prediction 137 182 - -
Tsu07g02638 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 412 - -
Tsu07g02638 412 CDD Bbox1_BBX-like 47 90 - -
Tsu07g02638 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
Tsu07g02638 412 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tsu07g02638 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tsu07g02638 412 SMART bboxneu5 48 90 IPR000315 GO:0008270
Tsu07g02638 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Tsu07g02638 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02638 Tsu-Chr7 30767159 30769325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02638 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 53.191 8.98e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu07g02638 CCT 7.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02638 - - gmx:100796748 656.751