Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02637 atggGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTATGCATAATTCTAGTAAACACTGccatatcaatatcaatattcaAAGGCATTATTAGGACTATCCTACATATAATTGGTATCATTGCTTCACCATTATTATCCTCAACTTCCACTCCTTCACAAGATTACATCTCACCTGAATTCCATCTCAGTCCTTCAGATGATTTCATTCAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGATAGTGTGTGTAGTAGCTGGAAAGAACCTGAACATGATTGTTCAGTGTGTCTCACTCAATTTGAACCTGAATCAGAGATAAACTACTGTTTATCTTGTGGACATGTTTTCCATAAAGTGTGTTTGGAAAAGTGGTTGGATTATTGGAACATTACATGTCCACTTTGTAGGACTCCTTTAATTCCTGAAGATGATGCAACTGGCTTATGGTAA 462 0.3615 MGLSSLPAPSEGVLCIILVNTAISISIFKGIIRTILHIIGIIASPLLSSTSTPSQDYISPEFHLSPSDDFIQEFRSRTPTLRFDSVCSSWKEPEHDCSVCLTQFEPESEINYCLSCGHVFHKVCLEKWLDYWNITCPLCRTPLIPEDDATGLW 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02637 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 145 IPR013083 -
Tsu07g02637 153 SMART ringv_2 96 140 IPR011016 GO:0008270
Tsu07g02637 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 147 - -
Tsu07g02637 153 Pfam Ring finger domain 96 140 IPR001841 -
Tsu07g02637 153 ProSiteProfiles Zinc finger RING-type profile. 97 140 IPR001841 -
Tsu07g02637 153 SUPERFAMILY RING/U-box 89 146 - -
Tsu07g02637 153 SMART ring_2 97 139 IPR001841 -
Tsu07g02637 153 PANTHER - 1 147 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02637 Tsu-Chr7 30744707 30745168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02637 1 147 C3H Transcription Factor Family AT2G04240 57.419 1.58e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02637 K16285 - gmx:100786803 230.72